Detailed information on CNT30520108


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30591229Setaria italicaMusa acuminata22.8822.0888.5770forward
CNT30460105Setaria italicaSaccharum spontaneum37.2514.13100114forward
CNT30595662Setaria italicaOryza meridionalis31.0511.1597.8995forward
CNT30100373Setaria italicaOryza rufipogon37.5816.6297.39115reverse complement

Expression of CNT30520108

Peptides detected in this lncRNA

>peptide 1 (44 aa)
YKKLGADLSFGRTMIQYTACEGRHLPCGLQIHRRRARISSFIRE*

Sequence

>CNT30520108
TTTACAAGAAGTTGGGGGCAGATTTGAGCTTTGGACGTACAATGATACAGTACACGGCCTGTGAAGGACGCCACCTGCCGTGCGGCCTTCAAATCCATCG
CCGGCGGGCACGGATCTCATCATTCATTAGAGAATAACAACAGCTGCAGAGGAGATCGAGCTGGGGATTACTATTATTCAGGTGGCGTCGACGGCGGCGG
CGGCCTTGAAGAGGAGGAAGGAGAGGCGCTCGAGGGAGAAGTAGATGAAGGTGCCGCTGGTGTGGGTGAAGAAGCACCCGAAGTTGGCGCCCACCACGCA
CTGCCA