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Detailed information on CNT30520085


BLAST search results

BLAST vs Swiss-Prot:
sp|P18123|CATA3_MAIZE, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616919Setaria italicaSesamum indicum5.3928.7983.8793forward
CNT30185318Setaria italicaSecale cereale26.6933.6788.72461forward
CNT30295853Setaria italicaTriticum aestivum25.4865.4882.27440forward
CNT30592095Setaria italicaMusa acuminata12.6874.2482.65219forward
CNT30552865Setaria italicaOryza glaberrima6.0238.3890.38104forward
CNT30228927Setaria italicaAnanas comosus13.7210090.72237forward
CNT30347744Setaria italicaEragrostis tef36.8840.6886.81637forward

Expression of CNT30520085

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MVSGEPRSWMTVEKRTMTGVRVPGDRRKSAQVREVTSWVHSKKPLAEAPRAWTT

>peptide 2 (73 aa)
MDLSSWLTFGWPSESANLLTNLSCRSASHDLYLSPGCLKSLGFLMVAFSLLPTTGLAGIGTGGAWRSGACLDG*

>peptide 3 (30 aa)
MSSIHTCIQVVAYIRVVHMHACNMLQTLTQ*

Sequence

>CNT30520085
TTGGATCAAGTGATGGGCATCTCTGAACATCTGGCAAAAATAACAGCGCCAATATAATTTGAAGACGACCCATCCAGGAAGTGAGAATATGTCGTCGATA
CACACATGCATTCAGGTAGTAGCTTATATTAGGGTAGTACACATGCATGCATGTAACATGCTACAGACTTTGACACAGTAACGACGACGTAATAACCATC
ATCTAGTGTGCAGGCTCAGCTCGCGTCGTCTTTTCTCTCGTCTTATTGCATTGCATCTATCGAGGACTCAACAACAACTCGTACACGTCTCGGCCTCTGC
CTGCTGCTGCTGCAGGTCGCAGGACCATGACACTCGAAACTCACATGCTTGGCTTCACGTTCAGCCGTGTGGCTATCTTCATCCCCAGCGACGCGTCGCA
CTGCGATTAATTCCCATCCAAGATCATGTTAATTACTTAGTAATCATCAGTGTGATATGATCGATCGATCAAATCACTGAAGAATATAATCGCAAGTAAG
TTGTTACCGACCTTGGAGAGGAGGTCGATCCAGATGGACCTGAGCTCCTGGCTGACCTTTGGGTGGCCCAGCGAGTCGGCGAACCTCCTCACGAACCTCT
CCTGCCGGTCGGCGTCCCACGACCTGTACCTCTCCCCTGGCTGCTTGAAGTCGTTGGGCTTCCTGATGGTGGCCTTCTCCCTCCTCCCCACCACCGGCCT
CGCCGGCATCGGCACCGGCGGCGCCTGGCGCAGCGGCGCGTGCCTGGACGGGTAGTAGTCGACCTCCTCGTCCCGGTGCATGAAGTTCATGGCGCCGTCG
TAGTGGTTGTTGTGGTGCGCGCACCTCGGCGCGTTCACGGGGAGCATCAGGTAGTTCGGCCCCAGCCTGTAGCGCTGCGTGTCGGCGTACGCGAACACCC
GGCACTGCAGCATCTTGTCGTCGGAGTAGTAGATCCCGGGGACGACGAGCCCCGGGCCGAACGCCAGCTGCTCGTTCTCGTTGAAGAAGTTGTCGACGTT
CCGGTCTAGCACCAGCCGCCCCACCGGCTGAAGCGGGAGGAGGTCCTCCGGCCACGTCTTGGTGTCGTCCAGCGGGTCGAAGTCGTACTGCTCCTCCGTG
TCCGGGTCCATCACCTGCACGAACAGCTTCCACTCCGGGAAGGTCCCCGTGGCGATGGAGTCGTAGAGGTCCTGGGTCGCGTGGCTGTGGTTGCGCCCGC
CGACCAGCGCCGCCTCCTCGTCGGTGAGGATGCACCGCACGCCGCAGGTGGGCTTCCAGTGGAACTTGACGTAGTGCGCCTTGCCGGCGGCGTTGACGAA
GGTGTAGGTGTTGACGCCGAAGCCCTCCATGTGGCGGTAGTCGGTGGGAAGAAGAAGGTGTGGAGGCTCTCCGGGTGGTGCGAGAGGAAGTCGAACACCC
GCCAGTACTCCTGGACGTGGGACCTCGGGTTGGGCTTGAACGCGTGGATGACGTCGGGGAACTTGATGCCGTCGCGGATGAAGAAGACGGGGAAGTTGTT
GCCGAGGAGGTCCCAGTTCCCTTCCCGGGTGTAGAACTTGACGGCGAACCCGCGCGGGTCGCGGATGGTCTCCGGCGAGCCGCGCTCGTGGATGACGGTG
GAGAAGCGGACGATGACGGGGGTGCGGGTGCCCGGGGACCGGAGGAAGTCGGCGCAGGTCAGGGAGGTGACGTCGTGGGTGCACTCGAAGAAGCCCTTGG
CGGAGGCGCCGCGGGCGTGGACGACGC