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Detailed information on CNT30520038


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30342512Setaria italicaEragrostis tef30.938.7194.17120forward

Expression of CNT30520038

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MIFFWWADRVGSDRVARVWGWRGREEAWG*

>peptide 2 (42 aa)
GRGGRRSTTGRRGCGCGRGRGGPRARGGRDRPRRWRRRGVER*

>peptide 3 (62 aa)
AVEVGEEVPLGVAAADAGEGGEVPGLEAVEIDLGDGVDAESRGDRLLISRGLVVMDLLLGLG*

Sequence

>CNT30520038
GCGGTCGAGGTGGGCGAAGAAGTACCACTGGGCGTCGCGGCTGCGGATGCGGGAGAGGGAGGGGAGGTCCCAGGGCTCGAGGCGGTAGAGATCGACCTCG
GCGATGGCGTCGACGCGGAGTCGAGAGGTGATAGGCTGCTCATCTCTAGGGGGTTGGTGGTGATGGATCTGCTGCTAGGGTTGGGCTAGGATGCCGGGGA
ATCTCGCATGATTTTTTTTTGGTGGGCGGATCGGGTTGGGTCCGATCGGGTTGCTAGGGTTTGGGGGTGGCGTGGGAGGGAGGAGGCTTGGGGGTGAGGT
GGAGGCGGCGAACACAAGGCGGGCGGGCGATTGAGGAGGAGGAGGTTGAAGTCGCTGGTGGTAGGCGCTTTTTTGGTTTGGCGTCGGC