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Detailed information on CNT30519964


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SK39|SBP3_ARATH, E-value = 3e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691502Setaria italicaOryza sativa14.627.5694.29105forward
CNT30671312Setaria italicaSetaria viridis21.5647.2699.35155forward
CNT30442397Setaria italicaAegilops tauschii32.4123.5190.99233forward
CNT30667282Setaria italicaTriticum dicoccoides32.1351.9191.77231forward
CNT30686589Setaria italicaTriticum urartu32.1323.5791.34231forward
CNT30100170Setaria italicaOryza rufipogon29.7634.0294.39214forward

Expression of CNT30519964

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MVLAGDWGVEFRFRVQASVRPERSPETSASSLDILPRARLASRPAKMA*

>peptide 2 (57 aa)
FAITKPHSSIVELTPIFHSDYLLCNYTASKHIHPDRSQSVRRELCSRHIHPSLQIIW*

Sequence

>CNT30519964
TTTGCAATTACAAAGCCACACAGCTCAATAGTTGAACTAACCCCAATCTTTCATTCAGATTATTTGTTATGCAATTACACAGCAAGCAAGCACATACATC
CTGACAGATCCCAAAGTGTACGCAGGGAGTTATGTAGCAGGCACATACATCCTTCCCTTCAGATTATTTGGTAGCTAATGACATAATGTAGCAAGCAAGC
ACATGACTGCAAAAGGTAGGATACAGTTACACTGATACTTGCCCCGGCAGAGAGGTGGATGGTACTCGCCGGTGATTGGGGGGTTGAATTCAGATTTCGA
GTTCAGGCATCGGTGAGGCCGGAGAGGTCGCCGGAGACGTCGGCCTCGTCCTTGGACATCTTGCCGAGGGCGCGGCTGGCCTCGCGGCCGGCGAAGATGG
CGTAGGCGCCGCCGGGCCCGTAGAAGCTACGGCCGGAGGTGACGTCGTAGACCTTGCCGCGGATGGAGACGTAGATCGGCTTGGACGGGTCGGTGCCGTC
GTACGCCCGCAGCTGCGCCGCCGTCAGCTCCGTCGCCATCGTGCTGCTCGGCGCGGTGGGGGAAGCCGGGGAGGGAAAGGGGATCGATCGTTTGCCGCTG
CGCAGCGCGGTAGGTGTCTGTCACTCTGTCGTAGATTGTTGCGGGTTGCAAGTGAAGCGGCGAAGGAAGCGGTGGGCACCGGCGGTGTGATGTGAGCAGT
AGACTGAGCAGCAGCTGCG