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Detailed information on CNT30519943


BLAST search results

BLAST vs Swiss-Prot:
sp|P18123|CATA3_MAIZE, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30304171Setaria italicaTriticum aestivum27.652.5886.21377forward
CNT30228948Setaria italicaAnanas comosus22.33104.4583.61305forward
CNT30116279Setaria italicaOryza nivara28.1119.3583.59384forward

Expression of CNT30519943

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MDLSSWLTFGWPSESANLLTNLSCRSASHDLYLSPGCLKSLGFLMVAFSLLPTTGLAGIGTGGAWRSGACLDG*

>peptide 2 (30 aa)
MSSIHTCIQVVAYIRVVHMHACNMLQTLTQ*

Sequence

>CNT30519943
TGAACATCTGGCAAAAATAACAGCGCCAATATAATTTGAAGACGACCCATCCAGGAAGTGAGAATATGTCGTCGATACACACATGCATTCAGGTAGTAGC
TTATATTAGGGTAGTACACATGCATGCATGTAACATGCTACAGACTTTGACACAGTAACGACGACGTAATAACCATCATCTAGTGTGCAGGCTCAGCTCG
CGTCGTCTTTTCTCTCGTCTTATTGCATTGCATCTATCGAGGACTCAACAACAACTCGTACACGTCTCGGCCTCTGCCTGCTGCTGCTGCAGGTCGCAGG
ACCATGACACTCGAAACTCACATGCTTGGCTTCACGTTCAGCCGTGTGGCTATCTTCATCCCCAGCGACGCGTCGCACTGCGATTAATTCCCATCCAAGA
TCATGTTAATTACTTAGTAATCATCAGTGTGATATGATCGATCGATCAAATCACTGAAGAATATAATCGCAAGTAAGTTGTTACCGACCTTGGAGAGGAG
GTCGATCCAGATGGACCTGAGCTCCTGGCTGACCTTTGGGTGGCCCAGCGAGTCGGCGAACCTCCTCACGAACCTCTCCTGCCGGTCGGCGTCCCACGAC
CTGTACCTCTCCCCTGGCTGCTTGAAGTCGTTGGGCTTCCTGATGGTGGCCTTCTCCCTCCTCCCCACCACCGGCCTCGCCGGCATCGGCACCGGCGGCG
CCTGGCGCAGCGGCGCGTGCCTGGACGGGTAGTAGTCGACCTCCTCGTCCCGGTGCATGAAGTTCATGGCGCCGTCGTAGTGGTTGTTGTGGTGCGCGCA
CCTCGGCGCGTTCACGGGGAGCATCAGGTAGTTCGGCCCCAGCCTGTAGCGCTGCGTGTCGGCGTACGCGAACACCCGGCACTGCAGCATCTTGTCGTCG
GAGTAGTAGATCCCGGGGACGACGAGCCCCGGGCCGAACGCCAGCTGCTCGTTCTCGTTGAAGAAGTTGTCGACGTTCCGCGGGAGGAGGTCCTCCGGCC
ACGTCTTGGTGTCGTCCAGCGGGTCGAAGTCGTACTGCTCCTCCGTGTCCGGGTCCATCACCTGCACGAACAGCTTCCACTCCGGGAAGGTCCCCGTGGC
GATGGAGTCGTAGAGGTCCTGGGTCGCGTGGCTGTGGTTGCGCCCGCCGACCAGCGCCGCCTCCTCGTCGGTGAGGATGCACCGCACGCCGCAGGTGGGC
TTCCAGTGGAACTTGACGTAGTGCGCCTTGCCGGCGGCGTTGACGAAGGTGTAGGTGTTGACGCCGAAGCCCTCCATGTGGCGGTAGTCGGTGGGCACGC
CCACGTCGTCGAAGAGGAAGAAGAAGGTGTGGAGGCTCTCCGGGTGGTGCGAGAGGAAGTCGAACA