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Detailed information on CNT30519927


BLAST search results

BLAST vs Swiss-Prot:
sp|P18123|CATA3_MAIZE, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692473Setaria italicaOryza sativa23.2532.3688.47399forward
CNT30552704Setaria italicaOryza glaberrima9.556.2190.8163forward
CNT30243876Setaria italicaAvena sativa14.6933.4790.08252forward
CNT30663726Setaria italicaTriticum dicoccoides18.4738.3387.07317forward
CNT302263Setaria italicaZea mays20.431.3385.43350forward
CNT30348307Setaria italicaEragrostis tef57.3460.0490.55984forward
CNT30369978Setaria italicaOryza glumipatula23.3153.2688.75400forward
CNT30575497Setaria italicaOryza barthii23.7232.4688.94407forward

Expression of CNT30519927

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MSSIHTCIQVVAYIRVVHMHACNMLQTLTQ*

>peptide 2 (73 aa)
MDLSSWLTFGWPSESANLLTNLSCRSASHDLYLSPGCLKSLGFLMVAFSLLPTTGLAGIGTGGAWRSGACLDG*

>peptide 3 (45 aa)
MVSGEPRSWMTVEKRTMTGVRAPRAWTTRSGMRSRAKWATFSIRW*

Sequence

>CNT30519927
ACTAGCTCGGCGGAGTTGGATCAAGTGATGGGCATCTCTGAACATCTGGCAAAAATAACAGCGCCAATATAATTTGAAGACGACCCATCCAGGAAGTGAG
AATATGTCGTCGATACACACATGCATTCAGGTAGTAGCTTATATTAGGGTAGTACACATGCATGCATGTAACATGCTACAGACTTTGACACAGTAACGAC
GACGTAATAACCATCATCTAGTGTGCAGGCTCAGCTCGCGTCGTCTTTTCTCTCGTCTTATTGCATTGCATCTATCGAGGACTCAACAACAACTCGTACA
CGTCTCGGCCTCTGCCTGCTGCTGCTGCAGGTCGCAGGACCATGACACTCGAAACTCACATGCTTGGCTTCACGTTCAGCCGTGTGGCTATCTTCATCCC
CAGCGACGCGTCGCACTGCGATTAATTCCCATCCAAGATCATGTTAATTACTTAGTAATCATCAGTGTGATATGATCGATCGATCAAATCACTGAAGAAT
ATAATCGCAAGTAAGTTGTTACCGACCTTGGAGAGGAGGTCGATCCAGATGGACCTGAGCTCCTGGCTGACCTTTGGGTGGCCCAGCGAGTCGGCGAACC
TCCTCACGAACCTCTCCTGCCGGTCGGCGTCCCACGACCTGTACCTCTCCCCTGGCTGCTTGAAGTCGTTGGGCTTCCTGATGGTGGCCTTCTCCCTCCT
CCCCACCACCGGCCTCGCCGGCATCGGCACCGGCGGCGCCTGGCGCAGCGGCGCGTGCCTGGACGGGTAGTAGTCGACCTCCTCGTCCCGGTGCATGAAG
TTCATGGCGCCGTCGTAGTGGTTGTTGTGGTGCGCGCACCTCGGCGCGTTCACGGGGAGCATCAGGTAGTTCGGCCCCAGCCTGTAGCGCTGCGTGTCGG
CGTACGCGAACACCCGGCACTGCAGCATCTTGTCGTCGGAGTAGTAGATCCCGGGGACGACGAGCCCCGGGCCGAACGCCAGCTGCTCGTTCTCGTTGAA
GAAGTTGTCGACGTTCCGGTCTAGCACCAGCCGCCCCACCGGCTGAAGCGGGAGGAGGTCCTGGGTCGCGTGGCTGTGGTTGCGCCCGCCGACCAGCGCC
GCCTCCTCGTCGGTGAGGATGCACCGCACGCCGCAGGTGGGCTTCCAGTGGAACTTGACGTAGTGCGCCTTGCCGGCGGCGTTGACGAAGGTGTAGGTGT
TGACGCCGAAGCCCTCCATGTGGCGGTAGTCGGTGGGCACGCCCACGTCGTCGAAGAGGAAGAAGAAGGTGTGGAGGCTCTCCGGGTGGTGCGAGAGGAA
GTCGAACACCCGCCAGTACTCCTGGACGTGGGACCTCGGGTTGGGCTTGAACGCGTGGATGACGTCGGGGAACTTGATGCCGTCGCGGATGAAGAAGACG
GGGAAGTTGTTGCCGAGGAGGTCCCAGTTCCCTTCCCGGGTGTAGAACTTGACGGCGAACCCGCGCGGGTCGCGGATGGTCTCCGGCGAGCCGCGCTCGT
GGATGACGGTGGAGAAGCGGACGATGACGGGGGTGCGGGCGCCGCGGGCGTGGACGACGCGCTCCGGGATGCGCTCGCGCGCGAAGTGGGCCACCTTCTC
GATCAGGTGGTAGTCCTCCAGGAGGATCGGGCCGCGCGGGCCCACCGTCAGCGCCTCGTTGTCGTTCCACACCGGGGCGCCGGCGTTCGTCGTCGTCACC
GTGGTGTCGTGGCTGC