CANTATAdb - search

Detailed information on CNT30519897

BLAST search results

BLAST vs Swiss-Prot:
sp|P18123|CATA3_MAIZE, E-value = 5e-121

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30678563	Setaria italica	Setaria viridis	12.86	78.1	85.37	164	forward

Expression of CNT30519897

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MSSIHTCIQVVAYIRVVHMHACNMLQTLTQ*

>peptide 2 (73 aa)
MDLSSWLTFGWPSESANLLTNLSCRSASHDLYLSPGCLKSLGFLMVAFSLLPTTGLAGIGTGGAWRSGACLDG*

Sequence

>CNT30519897
TTGGATCAAGTGATGGGCATCTCTGAACATCTGGCAAAAATAACAGCGCCAATATAATTTGAAGACGACCCATCCAGGAAGTGAGAATATGTCGTCGATA
CACACATGCATTCAGGTAGTAGCTTATATTAGGGTAGTACACATGCATGCATGTAACATGCTACAGACTTTGACACAGTAACGACGACGTAATAACCATC
ATCTAGTGTGCAGGCTCAGCTCGCGTCGTCTTTTCTCTCGTCTTATTGCATTGCATCTATCGAGGACTCAACAACAACTCGTACACGTCTCGGCCTCTGC
CTGCTGCTGCTGCAGGTCGCAGGACCATGACACTCGAAACTCACATGCTTGGCTTCACGTTCAGCCGTGTGGCTATCTTCATCCCCAGCGACGCGTCGCA
CTGCGATTAATTCCCATCCAAGATCATGTTAATTACTTAGTAATCATCAGTGTGATATGATCGATCGATCAAATCACTGAAGAATATAATCGCAAGTAAG
TTGTTACCGACCTTGGAGAGGAGGTCGATCCAGATGGACCTGAGCTCCTGGCTGACCTTTGGGTGGCCCAGCGAGTCGGCGAACCTCCTCACGAACCTCT
CCTGCCGGTCGGCGTCCCACGACCTGTACCTCTCCCCTGGCTGCTTGAAGTCGTTGGGCTTCCTGATGGTGGCCTTCTCCCTCCTCCCCACCACCGGCCT
CGCCGGCATCGGCACCGGCGGCGCCTGGCGCAGCGGCGCGTGCCTGGACGGGTAGTAGTCGACCTCCTCGTCCCGGTGCATGAAGTTCATGGCGCCGTCG
TAGTGGTTGTTGTGGTGCGCGCACCTCGGCGCGTTCACGGGGAGCATCAGGTAGTTCGGCCCCAGCCTGTAGCGCTGCGTGTCGGCGTACGCGAACACCC
GGCACTGCAGCATCTTGTCGTCGGAGTAGTAGATCCCGGGGACGACGAGCCCCGGGCCGAACGCCAGCTGCTCGTTCTCGTTGAAGAAGTTGTCGACGTT
CCGGTCTAGCACCAGCCGCCCCACCGGCTGAAGCGGGAGGAGGTCCTCCGGCCACGTCTTGGTGACGTCGTGGGTGCACTCGAAGAAGCCCTTGGCGGAG
GCGCCGCGGGCGTGGACGACGCGCTCCGGGATGCGCTCGCGCGCGAAGTGGGCCACCTTCTCGATCAGGTGGTAGTCCTCCAGGAGGATCGGGCCGCGCG
GGCCCACCGTCAGCGCCTCGTTGTCGTTCCACACCGGGGCGCCGGCGTTCGTCGTCGTCACCGTGGTGTCGTGGC