Detailed information on CNT30519875


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670619Setaria italicaSetaria viridis59.4663.4996.95393forward
CNT30139784Setaria italicaLolium perenne19.8224.2187.79131forward
CNT30364692Setaria italicaSorghum bicolor23.1526.0292.16153forward
CNT30369722Setaria italicaOryza glumipatula19.212587.4127forward
CNT30100073Setaria italicaOryza rufipogon21.1840.3587.86140forward
CNT30575237Setaria italicaOryza barthii21.1832.1887.14140forward
CNT30556352Setaria italicaPanicum hallii50.5346.4590.12334forward

Expression of CNT30519875

Peptides detected in this lncRNA

>peptide 1 (92 aa)
MSKGSGAAALAAGGGTGTEAGAGADAGADAGAGIETGTLTGEGPTGASSSGAGAGTLTEGTKAAAVALDMGTSTTRFAGAAAGIEVATTRAG*

>peptide 2 (38 aa)
MFTSIRLVVFALLPSGGRFRLIAVFLLLSLTKEGSSTYR

>peptide 3 (98 aa)
HLLQLCKEGIPFVDATQIIHRQLQVVIVLPKDFLVQINLPKAHFLQLPQQLLFIVTIYVKRLRCCGAGCRWRHRHRSRGRGRCRCGCRGRHRNRHINR*

Sequence

>CNT30519875
CCATCTCCTCCAGCTCTGCAAGGAGGGGATCCCATTCGTTGACGCCACACAGATCATCCACAGACAGCTCCAGGTTGTAATTGTTCTGCCTAAGGATTTC
CTTGTTCAGATCAATCTGCCTAAAGCCCATTTCCTCCAGCTCCCTCAGCAGCTTCTCTTCATTGTGACCATCTATGTCAAAAGGCTCAGGTGCTGCGGCG
CTGGCTGCAGGTGGAGGCACAGGCACAGAAGCAGGGGCAGGGGCAGATGCAGGTGCGGATGCAGGGGCAGGCATAGAAACAGGCACATTAACAGGTGAAG
GTCCAACCGGGGCAAGCAGCTCAGGTGCAGGTGCAGGCACACTAACAGAAGGCACAAAAGCAGCAGCAGTGGCACTGGACATGGGAACATCAACGACAAG
GTTTGCAGGAGCTGCTGCAGGCATAGAGGTAGCAACTACTAGAGCAGGCTGAGATTTCTTGGGCTCTGGAACATCACTCGGATAGAAGTGGAACTCTTTA
GTGCGTTTGGCATGTGCACTAAGGGCTGGGTCAACAGGCTCAATGTTCACATCAATTAGGCTAGTTGTGTTTGCACTACTGCCTTCTGGTGGCAGATTCA
GATTAATAGCAGTGTTCCTGTTATTGTCATTAACAAAGGAAGGATCTTCCACCTACAGATG