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Detailed information on CNT30519871


BLAST search results

BLAST vs Swiss-Prot:
sp|Q71T45|H32_EUPES, E-value = 1e-68

BLAST vs NONCODE:
NONBRAT001321, E-value = 1e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697930Setaria italicaOryza sativa44.8668.1286.2297forward
CNT30670525Setaria italicaSetaria viridis48.6488.2299.07322forward
CNT30315797Setaria italicaCorylus avellana55.5955.6780.16368forward
CNT30700039Setaria italicaQuercus lobata50.1567.8982.53332forward
CNT30279437Setaria italicaChenopodium quinoa49.442.6980.73327forward
CNT3069242Setaria italicaQuercus suber38.8247.9584.44257forward
CNT30628401Setaria italicaVigna unguiculata15.7130.9581.73104forward
CNT30200358Setaria italicaPisum sativum52.4255.7982.42347forward
CNT3048083Setaria italicaPrunus dulcis53.3250.2881.3353forward
CNT30177168Setaria italicaSecale cereale56.3450.295.44373forward
CNT30284356Setaria italicaTriticum aestivum56.3457.8394.91373forward
CNT30219843Setaria italicaHordeum vulgare52.8760.9895.14350forward
CNT30398097Setaria italicaTriticum turgidum53.9346.6793.56357forward
CNT30565750Setaria italicaActinidia chinensis49.729.9482.37329forward
CNT3084175Setaria italicaVigna radiata51.0632.4478.99338forward
CNT30443502Setaria italicaAegilops tauschii48.7952.1889.78323forward
CNT30240007Setaria italicaAvena sativa54.2363.9993.87359forward
CNT30657055Setaria italicaTriticum dicoccoides56.3471.3295.44373forward
CNT30259840Setaria italicaBrassica rapa29.4667.4786.15195forward
CNT30140729Setaria italicaLolium perenne56.3469.0795.44373forward
CNT306284Setaria italicaZea mays35.35109.3586.32234forward
CNT30720909Setaria italicaTriticum spelta56.3457.1295.17373forward
CNT30368649Setaria italicaSorghum bicolor31.8750.2493.84211forward
CNT30622400Setaria italicaCajanus cajan55.294087.98366forward
CNT30358910Setaria italicaLactuca sativa42.4540.7878.29281forward
CNT3099660Setaria italicaOryza rufipogon22.8133.3394.04151forward
CNT30585391Setaria italicaEchinochloa crusgalli57.2558.2295.78379forward

Expression of CNT30519871

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MSNSVLFWYLRISRSATVPGRKRWGFFTPPVAGADLRAALVASCFLGALPPDPLAHKS

>peptide 2 (44 aa)
MGADRVAQALSPLMRRASWMSLGMMVTRLAWMAQRLVSSKSPTR*

Sequence

>CNT30519871
TGACAAGATTGAAGATTTGAGAAGCACATTTCATTTCCATTAAGATAACATATCAAATTACAGCAGCAGCATCATCAGTGCAAGATAAACAAGAAGATTA
CCAAGCGACCGAAAACAGCTCCCAGCACTACTGACACAACCATATCGATACTAATAACAAGCGACCAGGAGGAACCCAAGAGAAACACAGATCCTACAAC
TACAAGCAGACACCAAAAGGAAGGAAGCAACAGCGGCGACGACCATGGGGGCAGATCGCGTCGCTCAGGCCCTCTCGCCCCTGATGCGGCGCGCGAGCTG
GATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCAGAGGTTGGTGTCCTCGAAGAGCCCGACGAGGTAGGCCTCGGCGGCCTCCTGCAGC
GCGGCGACGGCGGAGGACTGGAAGCGGAGGTCGGTCTTGAAGTCCTGCGCGATCTCCCGGACGAGGCGCTGGAAGGGGAGCTTGCGGATGAGCAACTCCG
TGCTCTTCTGGTACTTGCGGATCTCCCGGAGCGCGACGGTGCCGGGGCGGAAGCGGTGGGGCTTCTTCACGCCGCCGGTGGCCGGGGCCGACTTGCGCGC
CGCCTTGGTCGCCAGCTGCTTCCTCGGGGCCTTGCCGCCCGATCCACTGGCCCACAAGTCGG