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Detailed information on CNT30519803


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671197Setaria italicaSetaria viridis66.297.0399.68621forward
CNT30458753Setaria italicaSaccharum spontaneum10.0229.2889.3694forward
CNT30109885Setaria italicaOryza longistaminata14.2945.5882.09134forward
CNT30150279Setaria italicaBrachypodium distachyon14.533.4280.15136forward

Expression of CNT30519803

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MGSDEERARRANRSSCCHHLTVLFDLSEFIQQQKFGQGLAASGTSLL*

>peptide 2 (83 aa)
VPFCHDLVRPPSCESPARKWRRELLSCSLQELIGEVKKRSSTRARPRKVSGNLLLYIMCEKWRVHMMFFLKKSTWKHRRELCP*

Sequence

>CNT30519803
CTGTGCCATTCTGCCATGACTTGGTGAGGCCACCGTCCTGTGAGAGCCCTGCGAGGAAGTGGAGGAGGGAGTTGCTCTCCTGCTCGTTGCAAGAACTTAT
TGGAGAGGTGAAGAAGAGGAGCAGCACAAGAGCAAGGCCAAGAAAAGTTTCGGGAAATTTGTTGCTGTATATCATGTGTGAGAAATGGAGAGTCCACATG
ATGTTCTTTCTCAAGAAATCAACATGGAAGCATAGGCGTGAGTTGTGTCCTTAGAGTTTATAATGGTAAATGGGTTCAGATGAAGAAAGAGCACGGAGAG
CAAACAGGAGCAGCTGCTGTCATCATTTAACCGTTTTGTTTGACCTTTCAGAATTTATTCAACAACAAAAATTTGGTCAAGGATTGGCTGCTTCAGGCAC
ATCCTTGTTGTGAATTGGGATTTGACATTTGCTACAGCACTTTCTAAGTTCACACCATGGTGATAGTGTACATTGGTACGGCTGATTTCCATGTGAGAAA
CGACAGAATTTGAACGGAGGAGGCACAATTCTGAAGGACGAATTTCACAGATTACCACAATATAATTCAAAGCATCCATTGATGTAGCGATTGGCATGGT
TGGAGAAGGGCAAGTGGATTGCAGGAAGATTCTTGCTGAATGCTGACCGAAGCTTTTACTTTCTAGCCAACTACATAATTCAAGGTCCAAGGCTGTGGTT
GACGCACGTGTTTACAAAACTGCAATTTTCCGTTGCGTCGACGCACTGCAGACAACGACTTGCATGATAGCAAGTGATCTTCAGAGTACAAGTGTACGTC
GGACTCAACTAGTGATTGCAGGCCGGCTTGTGTTTTGGACTCGGTAAATATCTCCGGAACATACATTTTCTTTCTTTCTTTTGTAAAGCTCCTTTTATTG
TGGCCAATTGAATTTGTAAGTCTTGTGCAATTACGGTG