Detailed information on CNT30519732


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6EU94|PIP11_ORYSJ, E-value = 5e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691492Setaria italicaOryza sativa59.2322.481.76170forward
CNT30670956Setaria italicaSetaria viridis66.217.0499.47190forward
CNT30640424Setaria italicaNymphaea colorata67.2523.2383.94193forward
CNT30564991Setaria italicaActinidia chinensis40.7728.9687.18117forward
CNT30590202Setaria italicaMusa acuminata63.4120.1384.07182forward
CNT3084566Setaria italicaVigna radiata23.3411.3888.0667forward
CNT3079298Setaria italicaBrassica juncea26.8318.1284.4277forward
CNT30131632Setaria italicaLolium perenne58.8977.1791.72169forward
CNT30365858Setaria italicaSorghum bicolor66.252.4995.26190forward
CNT30595794Setaria italicaOryza meridionalis65.8586.394.18189forward
CNT30325169Setaria italicaAsparagus officinalis64.1169.4384.78184forward
CNT3038888Setaria italicaCucumis melo27.877.7383.7580forward
CNT30331328Setaria italicaDioscorea rotundata22.312.4890.6264forward
CNT30116072Setaria italicaOryza nivara65.5122.994.15188forward
CNT30603734Setaria italicaOryza punctata66.214.4784.74190forward

Expression of CNT30519732

Peptides detected in this lncRNA

>peptide 1 (71 aa)
EDHSSEGPGDALDADGGALRVGLGDAHDGEDGDVEEEEGGDELGDARAVEGPGLELPGLEQRRTSSSFPSI*

>peptide 2 (33 aa)
KIIPPKDQAMPWMPTVAHLELDLETPMTVRMVM*

Sequence

>CNT30519732
CGAAGATCATTCCTCCGAAGGACCAGGCGATGCCCTGGATGCCGACGGTGGCGCACTTAGAGTTGGACTTGGAGACGCCCATGACGGTGAGGATGGTGAT
GTAGAGGAAGAGGAAGGTGGCGACGAACTCGGCGATGCCCGCGCGGTAGAAGGACCAGGACTTGAGCTCCCCGGGCTCGAACAGCGGCGCACGTCCTCCT
CCTTCCCCTCCATCTGATCTCTCTCCTCTCTCTCTCTCTCTTCCCTTGCGCGTTTGGCCTCGTTGGTTTCTTGAAGCAGCGGTGTGT