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Detailed information on CNT30519701


BLAST search results

BLAST vs Swiss-Prot:
sp|P49316|CATA2_NICPL, E-value = 2e-68

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020926Setaria italicaCitrullus lanatus21.7842.4781.42296forward
CNT30298786Setaria italicaTriticum aestivum17.1488.9387.55233forward
CNT30223857Setaria italicaHordeum vulgare8.7647.2289.08119forward
CNT30139766Setaria italicaLolium perenne19.2153.2790.42261forward
CNT3037432Setaria italicaCucumis melo13.2544.8982.78180forward

Expression of CNT30519701

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MSSIHTCIQVVAYIRVVHMHACNMLQTLTQ*

>peptide 2 (73 aa)
MDLSSWLTFGWPSESANLLTNLSCRSASHDLYLSPGCLKSLGFLMVAFSLLPTTGLAGIGTGGAWRSGACLDG*

>peptide 3 (53 aa)
MVSGEPRSWMTVEKRTMTGVRVPGDRRKSAQVREVTSWVHSKKPLAEAPRAWTT

Sequence

>CNT30519701
TTGGATCAAGTGATGGGCATCTCTGAACATCTGGCAAAAATAACAGCGCCAATATAATTTGAAGACGACCCATCCAGGAAGTGAGAATATGTCGTCGATA
CACACATGCATTCAGGTAGTAGCTTATATTAGGGTAGTACACATGCATGCATGTAACATGCTACAGACTTTGACACAGTAACGACGACGTAATAACCATC
ATCTAGTGTGCAGGCTCAGCTCGCGTCGTCTTTTCTCTCGTCTTATTGCATTGCATCTATCGAGGACTCAACAACAACTCGTACACGTCTCGGCCTCTGC
CTGCTGCTGCTGCAGGTCGCAGGACCATGACACTCGAAACTCACATGCTTGGCTTCACGTTCAGCCGTGTGGCTATCTTCATCCCCAGCGACGCGTCGCA
CTGCGATTAATTCCCATCCAAGATCATGTTAATTACTTAGTAATCATCAGTGTGATATGATCGATCGATCAAATCACTGAAGAATATAATCGCAAGTAAG
TTGTTACCGACCTTGGAGAGGAGGTCGATCCAGATGGACCTGAGCTCCTGGCTGACCTTTGGGTGGCCCAGCGAGTCGGCGAACCTCCTCACGAACCTCT
CCTGCCGGTCGGCGTCCCACGACCTGTACCTCTCCCCTGGCTGCTTGAAGTCGTTGGGCTTCCTGATGGTGGCCTTCTCCCTCCTCCCCACCACCGGCCT
CGCCGGCATCGGCACCGGCGGCGCCTGGCGCAGCGGCGCGTGCCTGGACGGGTAGTAGTCGACCTCCTCGTCCCGGTGCATGAAGTTCATGGCGCCGTCG
TAGTGGTTGTTGTGGTGCGCGCACCTCGGCGCGTTCACGGGGAGCATCAGGTAGTTCGGCCCCAGCCTGTAGCGCTGCGTGTCGGCGTACGCGAACACCC
GGCACTGCAGCATCTTGTCGTCGGAGTAGTAGATCCCGGGGACGACGAGCCCCGGGCCGAACGCCAGCTGCTCGTTCTCGTTGAAGAAGTTGTCGACGCT
CTCCGGGTGGTGCGAGAGGAAGTCGAACACCCGCCAGTACTCCTGGACGTGGGACCTCGGGTTGGGCTTGAACGCGTGGATGACGTCGGGGAACTTGATG
CCGTCGCGGATGAAGAAGACGGGGAAGTTGTTGCCGAGGAGGTCCCAGTTCCCTTCCCGGGTGTAGAACTTGACGGCGAACCCGCGCGGGTCGCGGATGG
TCTCCGGCGAGCCGCGCTCGTGGATGACGGTGGAGAAGCGGACGATGACGGGGGTGCGGGTGCCCGGGGACCGGAGGAAGTCGGCGCAGGTCAGGGAGGT
GACGTCGTGGGTGCACTCGAAGAAGCCCTTGGCGGAGGCGCCGCGGGCGTGGACGACGC