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Detailed information on CNT30519660


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SK39|SBP3_ARATH, E-value = 5e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30364531Setaria italicaSorghum bicolor27.256.8894.51182forward
CNT30595654Setaria italicaOryza meridionalis39.0144.6295.02261forward
CNT30369561Setaria italicaOryza glumipatula39.0142.6595.02261forward
CNT30100122Setaria italicaOryza rufipogon39.0145.7195.02261forward

Expression of CNT30519660

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MVLAGDWGVEFRFRVQASVRRATMGYLAWNLVSQSARTPSSFSVRPERSPETSASSLDILPRARLASRPAKMA*

>peptide 2 (57 aa)
FAITKPHSSIVELTPIFHSDYLLCNYTASKHIHPDRSQSVRRELCSRHIHPSLQIIW*

Sequence

>CNT30519660
TTTGCAATTACAAAGCCACACAGCTCAATAGTTGAACTAACCCCAATCTTTCATTCAGATTATTTGTTATGCAATTACACAGCAAGCAAGCACATACATC
CTGACAGATCCCAAAGTGTACGCAGGGAGTTATGTAGCAGGCACATACATCCTTCCCTTCAGATTATTTGGTAGCTAATGACATAATGTAGCAAGCAAGC
ACATGACTGCAAAAGGTAGGATACAGTTACACTGATACTTGCCCCGGCAGAGAGGTGGATGGTACTCGCCGGTGATTGGGGGGTTGAATTCAGATTTCGA
GTTCAGGCATCGGTGAGGCGGGCGACGATGGGGTACTTGGCCTGGAACTTGGTCTCCCAGTCAGCGAGGACGCCGAGCTCCTTCTCGGTGAGGCCGGAGA
GGTCGCCGGAGACGTCGGCCTCGTCCTTGGACATCTTGCCGAGGGCGCGGCTGGCCTCGCGGCCGGCGAAGATGGCGTAGACCTTGCCGCGGATGGAGAC
GTAGATCGGCTTGGACGGGTCGGTGCCGTCGTACGCCCGCAGCTGCGCCGCCGTCAGCTCCGTCGCCATCGTGCTGCTCGGCGCGGTGGGGGAAGCCGGG
GAGGGAAAGGGGATCGATCGTTTGCCGCTGCGCAGCGCGGTAGGTGTCTGTCACTCTGTCGTAGATTGT