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Detailed information on CNT3051926


BLAST search results

BLAST vs Swiss-Prot:
sp|Q70Y04|PSAB_AMBTC, E-value = 5e-148

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30560220Amborella trichopodaActinidia chinensis50.4646.0590.22716forward
CNT30232496Amborella trichopodaAnanas comosus29.3270.1585.82416forward
CNT30205718Amborella trichopodaHelianthus annuus10.9938.6192.31156forward
CNT30484006Amborella trichopodaChara braunii10.7141.8781.58152forward
CNT3024232Amborella trichopodaPopulus trichocarpa10.5773.1788150forward

Expression of CNT3051926

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MNPVAQTRCPNRNINAQIDKLFAPKGLYPLISCKEFNHR*

>peptide 2 (29 aa)
MHPKPKYHKYLLILDHRKGNYNGNLSYLA*

>peptide 3 (48 aa)
MDFCLFLFLRIDESIDISVPILPLPLPLNQTFPCYMKFLLFPMIQVES*

>peptide 4 (80 aa)
GTTNVRTGIGCAPSHIYINSIAHLYRMVKGLSPSIIIEIHRNLKDSFFFFLTSSILLPPATNMHEPSRGVRVRIAQSLDS*

Sequence

>CNT3051926
GGTACTACTAATGTACGAACAGGGATTGGATGTGCCCCCTCCCATATCTATATAAATAGTATAGCCCATTTATATAGAATGGTAAAGGGACTCAGCCCTT
CTATTATCATAGAGATTCATAGAAATTTGAAGGATTCTTTTTTTTTTTTCCTTACCAGCTCGATCTTGTTGCCCCCGGCAACAAACATGCATGAACCATC
TCGCGGAGTACGTGTCCGGATAGCCCAAAGTCTCGATAGTTAGCTCTAGGTCTTCCGATAAAAAAACAACGTCAATGAAGATGTATAGGTGCACTATTAC
GTGGAGGGGATTGTAATTTTCCATGAATTTTTCATCAGTCACTCAACGATGGACTTTTGCTTATTTCTTTTTTTAAGGATCGACGAATCAATTGATATTT
CTGTTCCAATTTTGCCTCTTCCTCTCCCTCTGAATCAGACTTTTCCTTGCTATATGAAGTTCTTACTATTTCCAATGATACAGGTCGAATCCTAGATGTA
GAAATATTAAGAAGGTGGATCTCCCCTTCTCCGTCAAAACGAATGAAATTGTTGCTGATATAGGAAGATGCCACCTCTATTTTTTTCTAAAAATTAACCA
AATTTGCCTAATGTAGAGGCAATTAAGAAAGCTGCATAAGTAAATATATAACCTACAGATAAGTGGGCTAAGCCAACCAGTCTTGCTTGAACAATGGAAA
GAGCCACAGGTTTATCCCTCCATCGAATCAAATTAGCCAAAGGTGTGTGTTAATGAGCCCATGCTAGAGTTTCAATCAATTCCTGCCAATATCCTCGCCA
GGAAATTAAAAACATGAATCCAGTAGCCCAAACCAGATGCCCAAATAGGAACATCAATGCCCAGATAGATAAACTATTTGCACCAAAAGGGTTATATCCA
TTAATAAGTTGTAAAGAGTTTAACCATAGATAATTTCTTAACGATCCCATCAAATAAGTGGACGATTCATTAAATTGTGAAGGCTTACCCTGCCATAAAA
TGATATGCTTCTAATGCCAATAAAAAGTAACACATCCAATGGTATTTAACATCCAGAAAACCGCCAAATAAAATGCATCCCAAGCCGAAATATCACAAGT
ACCTCCTCATCCTGGACCATCGCAAGGGAAACTATAACGGAAATCTTTCTTATCTGGCATGAACTTGGAACCACATGCATTTAAAGCACCTTTTACTAAG
ATCAATGTAGTTGTATGCAAACCTAGAGCAATAGCATGATGAATCAAGAAGTCTCCAAGACCTATTGTTAAGAATAGTGAATTACCATTCTCATTAATAG
CATTCAATAGTCAAGTAACCATAAGCTTCGGCCAGCATTGAATGTTGGGCCGTTCATTGAAGATAAGAGTACATCAAATCCATATGAAGTCTTATCATGA
GTGGATTGTATCCATTGGG