CANTATAdb - search

Detailed information on CNT30518749

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FID6|Y5392_ARATH, E-value = 3e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3071936	Juglans regia	Quercus suber	13.39	35.27	90.59	85	forward

Expression of CNT30518749

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MAGHHPHSLQFHSFLVSEAIASSQLPLQAFL*

>peptide 2 (39 aa)
MHHNATMSIFLANSFSFSVVSSNSMGSPLCNWSKTHVGK*

>peptide 3 (56 aa)
FLSLSLSDCFIFFPQQNFFFRFLAFFLLPGCAISSLPLSLSLSLTHTHFWAFLVHG*

Sequence

>CNT30518749
ATTTTTATCTCTTTCCCTGAGTGATTGTTTTATCTTTTTCCCGCAACAAAATTTTTTTTTCCGTTTCCTTGCTTTTTTCCTTCTCCCAGGTTGTGCGATT
TCATCTCTCCCTCTCTCTCTCTCTCTCTCTCTCACGCACACGCACTTTTGGGCTTTCCTTGTTCATGGCTAGTCACTGATCTTGTGATTTTCCTGTGTTT
TTTAATGATTCGCTTGCGAGTGAAGGACGAAGAACTTCCCTAGGACGCTTGGGACTTTGACTGGGTTTGTTCTCAGAATTTTACAGTGCGTTTCTGTAGT
AGGGCCGATTGGTTCAATGGCCGGCCACCACCCACACTCTCTTCAATTTCATAGCTTTCTGGTCTCGGAGGCAATTGCAAGCAGTCAACTTCCCCTTCAA
GCATTTCTATAACTCTACTCATTGAAGGACGATCATTGGGCTTCATTTGTATGCACCATAATGCGACCATGAGCATCTTTTTAGCTAATTCCTTTTCTTT
CTCTGTGGTATCTTCCAATTCTATGGGCTCTCCATTGTGCAATTGGTCAAAAACCCATGTTGGGAAGTAAACGTGGCTGGAATTGTCTGTTAAGGAATTC
CAATTCCTTCTTCTACCACCCATTTCCATTAGTAG