Detailed information on CNT30518728


BLAST search results

BLAST vs Swiss-Prot:
sp|P62981|RS27A_SOLTU, E-value = 2e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316655Juglans regiaCorylus avellana42.5679.0590.36249forward
CNT30545885Juglans regiaIpomoea triloba43.2555.7388.93253forward
CNT30374078Juglans regiaArabidopsis thaliana43.2541.2788.93253forward
CNT30728895Juglans regiaCorchorus capsularis43.2534.989.33253forward
CNT30628786Juglans regiaVigna unguiculata43.2551.6390.51253forward
CNT30122870Juglans regiaPhyscomitrium patens51.4579.6385.05301forward
CNT30220657Juglans regiaHordeum vulgare50.0937.2390.1293forward
CNT30623440Juglans regiaDaucus carota43.2512.7191.3253forward
CNT30356771Juglans regiaLactuca sativa43.2523.3888.14253forward
CNT30326410Juglans regiaAsparagus officinalis43.0821.0290.08252forward

Expression of CNT30518728

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MRRCWSGGMPSLSWILAFTLSMVSEDSTSRVMVFPVRVFTKICMVSGCCGRRRAAPPSGVGGGSGGIL

>peptide 2 (40 aa)
GILRAQSIKIKRNKIHKHRNSRKNKQQNAYQSRSMAGFGI*

Sequence

>CNT30518728
TGGAATCTTAAGAGCACAATCCATCAAAATTAAGAGGAATAAAATCCATAAACATCGAAATTCAAGGAAAAATAAGCAGCAAAATGCCTATCAGTCCAGA
TCCATGGCAGGATTCGGTATTTAGAATGTAAATAACAGGGCAAACTCAGAGAGTAATACTAAGACATAAAAGCATAATCTAATCACCGCCAGCCTTCTGG
TAAACATAGGTCAAGCCACACTTGCCGCAGTAGTGGCGGTCAAAGTGGTTGGCCATGAAGGTCTTCTTCTTCCTCTTCTTGGCACCGCCGCGGAGCCTGA
GGACGAGGTGGAGCGTAGACTCCTTCTGGATGTTATAGTCGGCTAAGGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCGGG
CGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTCACATTGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTCCCGGTTAGGGTTTTCACG
AAGATCTGCATGGTTTCCGGTTGTTGTGGGCGCAGAAGAGCCGCGCCGCCTTCGGGAGTAGGAGGAGGCTCAGGTGGGATACTGA