Detailed information on CNT30517680


BLAST search results

BLAST vs Swiss-Prot:
sp|P46293|RS16_GOSHI, E-value = 9e-89

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378107Juglans regiaArabidopsis thaliana8.2436.5981.67120forward
CNT30625853Juglans regiaDaucus carota28.2832.0979.13412forward
CNT30120766Juglans regiaCitrus clementina9.8126.4386.01143forward

Expression of CNT30517680

Peptides detected in this lncRNA

>peptide 1 (91 aa)
MNEKKNTRNPISMQALNTKTITSKQLKIKTLPFDLGFSIPQRYDFWNLALAPRPPNFLGSQRLGSATSKVRSYLTRISLISFLLCSSTYFW*

>peptide 2 (47 aa)
MKKWRLNKVFIWVCRVRPRVLAWDVNGLIREKILIYQVNPSRSTGNM*

>peptide 3 (56 aa)
MILPSDIVNYYQKDSNRVTLPKDYKPTNVRAFTDNQMQNGTPNNFDDCTNKNISTH*

>peptide 4 (43 aa)
FKVTFFCLYLLLYRLVFFILHVYDIDIRLNQKTNKIFEVNRKK*

Sequence

>CNT30517680
ATTTAAAGTGACTTTCTTCTGCCTTTATCTTCTTCTATATAGGCTTGTCTTTTTTATACTTCATGTGTATGATATTGATATAAGGTTAAACCAGAAGACT
AACAAAATATTCGAAGTAAACCGAAAAAAATAAATAACACACCAGTCCGCGAGCTTTAATTTTAGATTTTTTCTTAATTTTAAGCAGCATATCACATTCA
TCAAGTCAAATATCATGTATTGTTTCCGGTATCAAGGTTTTATCCATCCGAATATCCGAAATAAATAGCAACAGTCAAGCACTTAATGATACTTCCATCA
GATATCGTAAATTATTATCAAAAGGACTCAAACAGAGTCACACTACCTAAGGATTATAAACCCACAAACGTCCGGGCCTTCACCGACAATCAAATGCAAA
ATGGAACACCAAACAACTTTGACGACTGCACTAATAAGAATATATCAACACATTAACCCGTAGCCAATCAAGAACTCAGGACACTCGGGAGTCAGCGAGC
CAAATTGAGTCAACCATGCGTTTGAACGCAAATTCAAGTAGCCGTAACTAAAACCGTAAACATTCCGCAGCAAGAAAAGCCCCCCAAACACGGTACTAAA
GCAAAGGATTCCATATATTTTATCTAAAATCTCCAAGTTCGAATCAACCTTAAGCAACAACCAACAGCCAGTTCCATAATTATGAATGAAAAGAAAAATA
CTAGAAACCCCATTAGCATGCAAGCCTTAAATACGAAAACGATAACCTCAAAACAGCTAAAAATAAAAACTTTGCCTTTTGATTTGGGATTTTCGATTCC
TCAACGGTATGACTTCTGGAACCTAGCCCTGGCACCGCGACCACCGAACTTCTTGGGCTCACAGCGTCTCGGGTCAGCGACAAGCAAGGTCCGGTCGTAC
CTGACGAGGATATCCTTAATCTCCTTCTTGCTCTGTTCGTCCACATACTTCTGGTAGTACGCAACGAGAGCCTTGGCTATGCTCTGGCGGATGGCGTAGA
TCTGGGAAGTGTGGCCTCCACCCTTTACACGAATCCGCATGTCGACGTCCGCGAAACGGTGCCTTCCAAGCAAGAGTATCGGCTCGTAGGCCTTGAACCT
CAGGATCTCCGGCTCCACCAGCTCGATCGGGCACCCGTTGATCTTGATCAGACCACGCCCCCGCTTGCAGTAGGTCACAGCCACCGCCGTCTTCTTGCGC
CCGAAGCATTGCACCGACTCTACAGGACCGGTCGCCATTGTTGCTTTGCAAGAGAGTCCTCCTGAAGTAAAATCGCAGAAACAGAAACCCTAATTTGGTG
AATATGAAGAAATGGAGGCTGAACAAGGTATTTATATGGGTATGTCGTGTTCGCCCTAGGGTTTTGGCTTGGGATGTAAATGGCTTGATTCGGGAAAAAA
TATTAATTTACCAAGTCAATCCCAGCCGTTCAACTGGTAATATGTGAGACAACCTAG