Detailed information on CNT30517614


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39994|CALX_HELTU, E-value = 2e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3043981Juglans regiaPrunus dulcis27.9541.7680.95147forward
CNT30164689Juglans regiaPistacia vera36.3134.7387.43191forward
CNT30333676Juglans regiaCynara cardunculus38.7839.5380.88204forward

Expression of CNT30517614

Peptides detected in this lncRNA

>peptide 1 (43 aa)
GSQRGHPKDRQLLLQPFVSLSHLQTLVSMLLACMILQTSHHPQ*

>peptide 2 (31 aa)
LEVREAIRKTGSCFFSLLFLFLIFKLWFPCC*

>peptide 3 (75 aa)
WKSERPSERPAAASSAFCFSFSSSNFGFHAVSLYDSADFSSPAMRILSNKMPSCIVQISMPMAAMGSKSGFSSSK*

>peptide 4 (65 aa)
MPLPFISGIPLHWPLPHATPRCNLTLWVISFWCLPFTIFLVIPIFWLCSLRIVDLLRLIIQPSFRF

Sequence

>CNT30517614
CTGGAAGTCAGAGAGGCCATCCGAAAGACCGGCAGCTGCTTCTTCAGCCTTTTGTTTCTCTTTCTCATCTTCAAACTTTGGTTTCCATGCTGTTAGCCTG
TATGATTCTGCAGACTTCTCATCACCCGCAATGAGAATATTGTCAAACAAAATGCCATCCTGCATTGTCCAGATCTCAATGCCAATGGCAGCAATGGGCT
CAAAATCAGGTTTCTCGAGCTCAAAGTAATCTGGGTTTGGGATTTCTTGAGCTCAAAGTAATCTGGGTTTGGGATTTCTTGAGGTTTCCAAATGCCCTTA
TAATTAGGGTTGTCAATTAGAGGAGCATGCCACTTCCCTTTATAAGCGGGATTCCTCTTCATTGGCCTCTTCCACACGCCACACCCAGGTGCAACCTCAC
ACTTTGGGTTATCAGTTTTTGGTGCCTCCCATTCACCATCTTCCTCGTCATCCCAATCTTCTGGCTTTGCAGCCTCAGGATCGTCGATCTCCTCCGGCTC
ATCATCCAGCCATCCTTCAGGTTTCA