Detailed information on CNT30517478


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LIS3|GAE6_ARATH, E-value = 4e-152

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30710466Juglans regiaGlycine max29.9921.1882.58287forward
CNT30612253Juglans regiaArabis alpina6.4823.0593.5562forward
CNT30570657Juglans regiaVitis vinifera6.7920.592.3165forward
CNT3039995Juglans regiaMarchantia polymorpha22.362581.31214forward

Expression of CNT30517478

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MRARAMRRVARNKTLEEALIRSFVLLTLRR*

>peptide 2 (98 aa)
MVIGVGDFFAGLLCCGVETGGLVGPLRFGEWALGVEAVDGAGRRPNDCRLRIHSLGNFQEIHKPGNVGVHVGLWILHGVANPSLGGEVEDVCKGNDVE*

>peptide 3 (50 aa)
MPLGRRGVEEWRTCFSQEGPPAWGPYRAEERKLRRVVWRWKELGASESGG*

>peptide 4 (47 aa)
MVLLVSGGEEAILLSIAPSFLFCCLISRVRNKLDHREKEMAQKCYVSA

>peptide 5 (38 aa)
MEGAGGIGKRRVVEDEVKDEGEGDEKSGAEQDLGGGVN*

Sequence

>CNT30517478
CTGTAAGATGTCCTTGGTGAAGAAGAAATAGGCCATGTCTGGTCTACCCCAAGGTCCGTACACCGTGAAGAATCTTAAGCCAGTGAGGGAGAGCCCGTAG
ATATGGTTATAGGTGTGGGCGATTTCTTCGCCGGCCTTCTTTGTTGCGGCGTAGAGACTGGCGGGCTGGTCGGTCCGTTGCGATTCGGAGAATGGGCTCT
CGGTGTTGAGGCCGTAGACGGAGCTGGACGACGCCCAAACGATTGCCGGTTGAGGATTCACAGCCTTGGCAACTTCCAAGAGATTCACAAACCCGGCAAT
GTTGGAGTTCACGTAGGATTGTGGATTCTGCATGGCGTAGCGAACCCCAGCCTGGGCGGCGAGGTGGAGGATGTGTGTAAAGGGAACGACGTCGAATAAC
TTAGTGAGCAATGGGGCATCGTTCAAATCTCCTTCCACAATAAAGACTTGATGTTTGAGTAAAAGCGCCTGCCTCGCGCGCTTCAGCGAGGGATCATAGT
AGTCGTTGAAGTTGTCGAGGACGGACATGCCATTGGGGCGGCGGGGGGTGGAGGAGTGGCGGACTTGCTTCTCCCAGGAGGGGCCGCCGGCGTGGGGACC
GTATAGAGCGGAGGAGAGGAAGTTGCGGCGGGTAGTGTGGAGATGGAAGGAGCTGGGGGCATCGGAAAGCGGAGGGTAGTGGAGGACGAAGTAAAAGATG
AGGGCGAGGGCGATGAGAAGAGTGGCGCGGAACAAGACCTTGGAGGAGGCGTTAATTAGGAGCTTTGTGCTGTTAACTCTGCGGAGGTAGCTGTTGTAGC
GCTCTATCTTTATGGTCTTGCTCGTGTCTGGCGGAGAAGAAGCCATTTTGCTTAGCATAGCTCCTTCTTTCCTTTTTTGTTGTCTAATTTCTCGTGTCAG
AAACAAATTAGATCATAGAGAGAAAGAAATGGCTCAAAAGTGTTATGTATCTGCGTG