Detailed information on CNT30517345


BLAST search results

BLAST vs Swiss-Prot:
sp|Q42676|TKTC_CRAPL, E-value = 7e-101

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673782Juglans regiaSetaria viridis79.8841.8784.06389forward
CNT30376018Juglans regiaArabidopsis thaliana70.2363.4583.63342forward
CNT30282914Juglans regiaChenopodium quinoa71.6679.583.38349forward
CNT30381368Juglans regiaManihot esculenta85.0173.2786.23414forward
CNT30487343Juglans regiaOlea europaea80.955.1884.01394forward
CNT30710335Juglans regiaGlycine max39.2233.184.29191forward
CNT3096846Juglans regiaSolanum tuberosum63.2454.984.42308forward
CNT30180248Juglans regiaSecale cereale42.327.581.55206forward
CNT30226636Juglans regiaHordeum vulgare21.9743.1583.18107forward
CNT30397861Juglans regiaTriticum turgidum42.5162.3585.02207forward
CNT30443406Juglans regiaAegilops tauschii86.0472.4981.86419forward
CNT30310450Juglans regiaCamelina sativa45.1773.0982.27220forward
CNT3081106Juglans regiaBrassica juncea58.1124.882.69283forward
CNT30264253Juglans regiaBrassica rapa73.3160.9281.79357forward
CNT30612837Juglans regiaArabis alpina23.6143.8987.83115forward
CNT30141475Juglans regiaLolium perenne86.0454.0682.82419forward
CNT30232967Juglans regiaAnanas comosus19.5121.4987.3795forward
CNT30623483Juglans regiaDaucus carota73.178.2483.15356forward
CNT30687144Juglans regiaTriticum urartu86.0434.1583.05419forward
CNT30722983Juglans regiaTriticum spelta37.9933.8284.86185forward
CNT30368864Juglans regiaSorghum bicolor52.5762.7582.42256forward
CNT30325590Juglans regiaAsparagus officinalis45.1711.4585220forward
CNT3035293Juglans regiaCucumis melo40.663382.32198forward

Expression of CNT30517345

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MLLQSRFHLLDGASEYWALPGNLLGALLADGLGHLLRVQLNHES*

>peptide 2 (41 aa)
PRESKNRGSLLVKDCNLVCSCSLVSICWTEHQNIGHCPETC*

>peptide 3 (46 aa)
RERARIEGLFLLRTATLYAPAVSFPSAGRSIRILGIARKLARCSIG*

>peptide 4 (46 aa)
MPLQMAPIPCSLTPNLTLRSSGVFFWKSPNIFSNVMLEEARALRHC*

>peptide 5 (52 aa)
MLSNTKPNIAFFWRILLEVPKHLQQCHVGRSKGIKTLLRQISGGISGAVWSIR

Sequence

>CNT30517345
GCCGAGAGAGAGCAAGAATAGAGGGTCTCTTCTTGTTAAGGACTGCAACCTTGTATGCTCCTGCAGTCTCGTTTCCATCTGCTGGACGGAGCATCAGAAT
ATTGGGCATTGCCCGGAAACTTGCTAGGTGCTCTATTGGCTGATGGGTTGGGCCATCTTCTCCGAGTCCAATTGAATCATGAGTCATAACATAGATAACT
CTAGCTTCACATAATGCAGATATCCTGATAGCTGCTCTCATGTAGTCGGTGAAAACAAAGAAAGTAGCACAGTATGGAATCAGCCCAGGGCTGTGTAAGG
CAATGCCATTGCAAATGGCTCCCATTCCATGCTCTCTAACACCAAACCTAACATTGCGTTCTTCTGGCGTATTCTTTTGGAAGTCCCCAAACATCTTCAG
CAATGTCATGTTGGAAGAAGCAAGGGCATTAAGACATTGCTGAGACAGATTTCTGGTGGCATCAGCGGGGCTGTCTGGAGTATACGT