Detailed information on CNT30517286


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30631135Juglans regiaVigna unguiculata30.6114.0586.67165forward
CNT30502187Juglans regiaNicotiana attenuata21.343.1684.35115forward
CNT30711465Juglans regiaGlycine max36.9242.6186.93199forward
CNT3042748Juglans regiaPrunus dulcis13.7325.6191.8974forward
CNT3085870Juglans regiaVigna radiata20.5925.2887.39111forward
CNT30552699Juglans regiaOryza glaberrima14.8420.3683.7580forward
CNT30261241Juglans regiaBrassica rapa16.5124.4585.3989forward
CNT30118191Juglans regiaCitrus clementina22.6311.7482.79122forward

Expression of CNT30517286

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVLVEDDCRTKTPSWVNTGSSYGDGSQVNQEHREPNW*

>peptide 2 (43 aa)
KRKKGPGGPQKKHASSSITYLTNVHIHGENRESTVTGLTRQDL*

>peptide 3 (34 aa)
RERRDRGDLKRSMLVVVLHILRTYTYTEKTGKVL*

Sequence

>CNT30517286
AAGAGAAAGAAGGGACCGGGGGGACCTCAAAAGAAGCATGCTAGTAGTAGTATTACATATCTTACGAACGTACACATACACGGAGAAAACAGGGAAAGTA
CTGTAACTGGACTGACTCGGCAAGATCTTTAACTTTCAACGTCAGTGGCCGCAAATAAAAGCATCACGAGTTGCGTGATCATGCGTAACACTTCACTTCG
ATTTGAAAGGCATGGCTCTAATCACAACCTGGTGGTATAGAGCTGCAAGTGCTGCACCAATGAATGGTCCTTGTCGAAGATGATTGCCGCACCAAGACTC
CGAGCTGGGTTAATACCGGTTCCAGTTATGGGGATGGTAGCCAAGTGAACCAAGAACACCGCGAACCCAATTGGTAGAGGTGCCAAAATCTGACCAAATA
CCATACACCATCACCAACAATCACCGACGAATTAAAGAGAAGAACAAGAATCACCATACAACAATCTTACTGTGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGGAAGATCAGGGAGCTAAGGGATATTGCTTACGGGA