CANTATAdb - search

Detailed information on CNT30517283

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30677245	Juglans regia	Setaria viridis	6	23.64	96.15	52	forward
CNT30546820	Juglans regia	Ipomoea triloba	16.51	69.76	84.62	143	forward
CNT30494159	Juglans regia	Olea europaea	18.94	60.52	84.76	164	forward
CNT3022185	Juglans regia	Populus trichocarpa	20.09	29.64	85.63	174	forward

Expression of CNT30517283

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MSKEDENFSTSTLRFSMSLLFTRPLLKSFNSFPNSFWMFKVIVTAR*

>peptide 2 (38 aa)
MILTHLSYQFIQFSNLLNPISKPNSYTKSKSHILPINY*

>peptide 3 (43 aa)
LLMWKLFYIKDNGISFGSKFLKTGWHGYKIMESVTPQSWIEKF*

Sequence

>CNT30517283
CTTTATTAATGTGGAAGTTGTTCTACATCAAAGATAATGGTATTTCATTCGGTTCAAAATTTTTAAAAACTGGTTGGCACGGATACAAGATAATGGAAAG
TGTAACACCCCAGTCCTGGATAGAGAAATTTTAAGTGATAAGAGTTAACTCTCCAACCCGTTTGGGACTGGGGCTTTACAGGAAGGGACTCTTGCCGGAC
TTGTATTCTGTTGACAACGGAGCTAGCTTGGGGTTCAAGATGATATTGACCCATCTTTCTTATCAATTCATCCAGTTCTCAAATCTATTGAATCCAATTT
CCAAACCAAACTCTTACACAAAATCAAAATCTCATATATTACCAATCAATTATTAGTAACAAACAGAAAAGGAAAAAAAAAAAAAAAAAAGAACGGGAAT
TGTAATTTATTGTTCTATTGAAACTAAGTATGATAAATGAACCATTAATCTTCTCCCCATGAGACAGAAGATATGTAAAAAAATGTTGCTAGGAGAGGAT
ATGATTTATACTCTCATAACATAGACCAACAAACACATTAAAATATATATTTTTTTTAATATATATATATATATATTAAAATCAAACTTTTAATATATAC
TAACCTAGCCAAATCAAAATTTTCTTTTCTCCTTCAATGGACCAAATATAATAGGAAGGAATAAGCACTAGACCTAATCCTTGTACTTCATCTCAGACAC
CAGGAATCCGGGCATGTCAAAAGAGGATGAGAACTTCTCGACATCGACCTTGAGATTCTCAATGTCCTTGTTGTTCACCAGGCCCTTGTTGAAGTCCTTC
AATAGCTTTCCAAATTCCTTTTGGATGTTCAAGGTGATTGTCACAGCGCGATGAAGGAACTCTCCT