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Detailed information on CNT30517189


BLAST search results

BLAST vs Swiss-Prot:
sp|P50246|SAHH_MEDSA, E-value = 9e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670787Juglans regiaSetaria viridis25.1925.7285.7198forward
CNT30529934Juglans regiaEucalyptus grandis26.7424.9485.58104forward
CNT30702258Juglans regiaQuercus lobata39.3332.5587.58153forward
CNT30375086Juglans regiaArabidopsis thaliana35.2219.1183.94137forward
CNT30619260Juglans regiaSesamum indicum26.749.7786.54104forward
CNT3020603Juglans regiaCitrullus lanatus64.2716.1584.8250forward
CNT3072357Juglans regiaQuercus suber39.3314.988.89153forward
CNT30380227Juglans regiaManihot esculenta38.0535.4985.14148forward
CNT30628366Juglans regiaVigna unguiculata37.2810.1588.28145forward
CNT30200315Juglans regiaPisum sativum34.9626.3684.56136forward
CNT30709695Juglans regiaGlycine max23.6527.5489.1392forward
CNT30543653Juglans regiaBrassica napus33.4218.8484.62130forward
CNT3076654Juglans regiaBrassica juncea33.4227.8485.38130forward
CNT30612249Juglans regiaArabis alpina38.0556.783.78148forward
CNT30607325Juglans regiaGossypium raimondii36.7611.0987.41143forward
CNT30651401Juglans regiaRosa chinensis36.7653.3685.31143forward
CNT30355186Juglans regiaLactuca sativa26.2213.8687.25102forward
CNT30573685Juglans regiaVitis vinifera21.5921.5485.7184forward
CNT3026673Juglans regiaPopulus trichocarpa35.4814.686.23138forward
CNT30151326Juglans regiaBrachypodium distachyon25.1924.1485.7198forward
CNT30723196Juglans regiaLupinus angustifolius37.2818.1988.28145forward

Expression of CNT30517189

Peptides detected in this lncRNA

>peptide 1 (60 aa)
RQFPPIPFHQQTQTLPKSTLASYHKHSKPFKYPNIIYFSHFLESLNTCSEQACKVPQWAR*

>peptide 2 (42 aa)
PSISSHTIPPTNTNPPKINSSILPQTLKAVQISKYYIFFSLS*

Sequence

>CNT30517189
CCCGTCAATTTCCTCCCATACCATTCCACCAACAAACACAAACCCTCCCAAAATCAACTCTAGCATCCTACCACAAACACTCAAAGCCGTTCAAATATCC
AAATATTATATATTTTTCTCACTTTCTTGAATCTCTCAATACCTGTAGTGAGCAGGCTTGTAAGGTCCCTCAATGGGCACGCTAATGTAATCAGCCTGGT
CCTTGCTGAGTTTGGTGAGCTTGGCCCCAAGCTTGCCAAGGTGCTTAGGCAACACATATACCTTCTTCTCGTATTTTCCACTTGTCTTCTCCTTCCACAA
CTCCAGCTGGGCAATCACCTGGTTTGTGAAGGAACAGGACATCACAAAACTAGGGTGCCCTGTGGCACAACCCAAGTTCATGAGCCGAC