Detailed information on CNT30516768


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SK39|SBP3_ARATH, E-value = 3e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30708893Juglans regiaGlycine max21.3973.786.57283forward
CNT30654037Juglans regiaRosa chinensis20.2669.2584.33268forward

Expression of CNT30516768

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVMTFKGYVNGTSRGHSGLAVAQDTVPAMTFKTKSFL*

>peptide 2 (56 aa)
MPRYPNFTRTKFIIFIISQAKTQDEPSSTRPARLKPSKEPIKSPNSNSIPRSIFSP*

>peptide 3 (53 aa)
MGFDGSVPLYSLSCWAVNSIDLRSLRVRLRGVMDKIERGEEVKRGRVCMVFRKR

>peptide 4 (33 aa)
MQPNRCIRRLIILLLMYYGWKNYLREYKYAYRE*

>peptide 5 (40 aa)
MRCMLNERFRTSIIGSSASMNTADPAMEEKDKFLILAWIG*

Sequence

>CNT30516768
CTTTATTGCAAGCAAAGCGTGGAAAAGTTTTGTAAATGAAACTTATATGAGATGAGATGCATGCTAAACGAACGGTTTAGAACCTCCATTATAGGAAGTA
GTGCATCTATGAATACTGCCGATCCTGCCATGGAAGAAAAAGATAAGTTCTTGATCCTGGCTTGGATCGGATGAGGGATCTGCTCAAGAGTTGGGATGGT
GATGACATTTAAGGGTTATGTGAATGGTACTTCCAGAGGGCACTCGGGTCTAGCAGTAGCACAAGACACGGTTCCAGCAATGACCTTTAAGACCAAAAGC
TTCCTGTAAAGAAGGTCACTAGATGCAGCCAAATCGTTGCATAAGGCGTTTGATAATCCTACTGCTGATGTACTACGGCTGGAAAAATTATCTCAGAGAA
TATAAATATGCATACAGGGAATAGAAGACAGAAGCCCAAATTCAACCAACTCATATATATTTCTACATAAGTAAACATGTTGGAATAGAAAACCAAGTCA
TATGTTGCAATCCACGCATTGATGCAATTATGCAATCAAACATATATGGGAGAATTTAACCCACTCATCACCAGATCCGCTAGCATAAACAGCCCCTAGG
AGGGTAGGGTAAACAAATTAATTGCATCAAACGCACAAAAGTACCAAACGCGCACACAGAGAGATGGATGCCAAGATACCCAAATTTCACACGTACCAAA
TTTATTATATTTATTATTTCCCAAGCTAAAACACAAGACGAACCCTCTAGCACAAGGCCCGCAAGATTAAAACCAAGCAAAGAACCAATAAAGTCGCCAA
ATTCCAACAGTATACCCAGGAGCATATTTTCTCCATAACACCAGTACGAAACATCAAATACATTCATAAAGACTCGTGTATAAAACACATAGCCGTAAAA
TGACTCAGCTTAGAGATTAAGAAGCGACGCGACCAACCACAGGGTACTTAGCTTCGAACTTCTTCTCCCAGTCGTTGAGGACTCCGATCTCCTTCTCAGA
GAGGCCATCGAGAGAAGGGGACACGTCCTCGTCATTCTTGCTCATCTTGGCCAGAGCTCTGCTGGCGTCCTTGCCGGCGAACATGGTGTAGGAACCTCCG
GGGCCGTAGAACGACTTTCCGTTTGTGACGTCGAAGATTCGGCCCTTCACAGCCACATATATGGGCTTTGATGGGTCCGTGCCGTTGTACTCGCTCAGCT
GCTGGGCTGTCAACTCCATTGATCTGCGTTCGCTTAGAGTGAGACTGCGTGGCGTGATGGATAAGATCGAAAGAGGTGAAGAAGTGAAACGAGGGCGTGT
GTGTATGGTATTTAGGAAAAGAG