Detailed information on CNT30516697


BLAST search results

BLAST vs Swiss-Prot:
sp|P07145|CATA_IPOBA, E-value = 6e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30238041Juglans regiaBrassica oleracea53.3324.2179.89184forward
CNT30570453Juglans regiaVitis vinifera54.242.682.35187forward

Expression of CNT30516697

Peptides detected in this lncRNA

>peptide 1 (56 aa)
SFSAKKLSMFLFKTMRPTGCRGKMSSGQVLLQIVWSETVPVSVGVGKNPTLEHLII*

>peptide 2 (54 aa)
MPGTTWAGLNASCSFSAKKLSMFLFKTKRPTGCRGMISSGQILLVSSGSKSNLSS

>peptide 3 (49 aa)
MGRVECKLLILCKEIVDVLVQDQAADWLQGYDFLGPDFACIKWVEVKFVL

>peptide 4 (33 aa)
VHSQRRSYQCSCLRPCGQLVAGAKCPRARFCCR*

Sequence

>CNT30516697
GTTCATTCTCAGCGAAGAAGTTATCAATGTTCTTGTTTAAGACCATGCGGCCAACTGGTTGCAGGGGCAAAATGTCCTCGGGCCAGGTTTTGTTGCAGAT
AGTTTGGTCCGAGACGGTGCCTGTGAGTGTCGGAGTAGGCAAAAATCCGACCCTGGAGCATCTTATCATTTGAGTAGTAGATGCCAGGAACCACATGGGC
AGGGTTGAATGCAAGTTGCTCATTCTCTGCAAAGAAATTGTCGATGTTCTTGTTCAAGACCAAGCGGCCGACTGGCTGCAGGGGTATGATTTCCTCGGGC
CAGATTTTGCTTGTATCAAGTGGGTCGAAGTCAAATTTGTCCTCG