« Back to Juglans regia search


Detailed information on CNT30516671


BLAST search results

BLAST vs Swiss-Prot:
sp|P17598|CATA1_GOSHI, E-value = 6e-99

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640190Juglans regiaNymphaea colorata33.9718.4781.76159forward
CNT30317874Juglans regiaCorylus avellana11.3221.7292.4553forward
CNT30373064Juglans regiaArabidopsis thaliana22.6518.5683.96106forward
CNT30501026Juglans regiaCoffea canephora60.4718.5382.69283forward
CNT30616919Juglans regiaSesamum indicum33.9749.2381.13159forward
CNT30282683Juglans regiaChenopodium quinoa76.7138.9884.4359forward
CNT30381388Juglans regiaManihot esculenta46.5837.3982.11218forward
CNT30405510Juglans regiaBeta vulgaris34.8334.6884.05163forward
CNT30526368Juglans regiaPhaseolus vulgaris48.0814.1384225forward
CNT30708847Juglans regiaGlycine max39.3219.1586.96184forward
CNT30168584Juglans regiaPistacia vera45.9479.3484.65215forward
CNT30638211Juglans regiaCapsicum annuum40.3833.8780.95189forward
CNT30305192Juglans regiaTriticum aestivum33.9729.3483.02159forward
CNT30567580Juglans regiaActinidia chinensis64.7460.685.81303forward
CNT3085325Juglans regiaVigna radiata77.7851.4984.62364forward
CNT30542306Juglans regiaBrassica napus22.6523.0484.91106forward
CNT30668803Juglans regiaTriticum dicoccoides65.1739.6681.97305forward
CNT30313019Juglans regiaCamelina sativa58.1244.4480.88272forward
CNT3080335Juglans regiaBrassica juncea61.5450.7979.51288forward
CNT30263082Juglans regiaBrassica rapa54.2775.8282.68254forward
CNT30475173Juglans regiaSaccharum spontaneum73.0846.0382.75342forward
CNT30654455Juglans regiaRosa chinensis51.0752.390.38239forward
CNT30478285Juglans regiaArabidopsis halleri31.4142.4982.99147forward
CNT30368538Juglans regiaSorghum bicolor30.5623.8384.62143forward
CNT30370393Juglans regiaOryza glumipatula23.9347.6687.5112forward
CNT30154060Juglans regiaPrunus persica76.0735.4687.08356forward
CNT30574555Juglans regiaVitis vinifera33.3318.8683.33156forward
CNT3038372Juglans regiaCucumis melo76.0732.3684.55356forward
CNT30576697Juglans regiaOryza barthii29.2731.5786.13137forward

Expression of CNT30516671

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MAVISSSNLNSLVLQQTLNPTSGFPGYHAHG*

>peptide 2 (50 aa)
MAGQNASCSFSAKKLSMFLFKTMRPTGCRGKMSSGQVLVTSSGSKSNLSS*

>peptide 3 (89 aa)
AADSLVQDGASEYQNRKRSESGATCHLSSRYQEPQWQGKMQVVHSQRRSYQCSCLRPCGQLVAGAKCPRARFWLHQVDQSQICPHDQDQ*

Sequence

>CNT30516671
GAGCTGCAGATAGTTTGGTCCAAGACGGTGCCTCTGAGTATCAGAATAGGAAAAGATCCGAGTCTGGAGCAACTTGTCATCTGAGTAGTAGATACCAGGA
ACCACAATGGCAGGGCAAAATGCAAGTTGTTCATTCTCAGCGAAGAAGTTATCAATGTTCTTGTTTAAGACCATGCGGCCAACTGGTTGCAGGGGCAAAA
TGTCCTCGGGCCAGGTTTTGGTTACATCAAGTGGATCAAAGTCAAATTTGTCCTCATGATCAGGATCAATAGTCTGGATGTATAGTTTCCACTCAGGATA
GTTTCCAGCTGCAATTGAGTCATATAGATCTTGTGTGGCATGGCTGTGATTAGCTCCTCCAACCTTAATAGCCTCGTCCTCCAACAAACACTTAACCCCA
CAAGTGGGTTTCCAGGCTACCACGCTCATGGATAACAGTTGAGAAACGGAGAATAATAGGTGTCTGAA