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Detailed information on CNT30516669


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3021611Juglans regiaCitrullus lanatus39.5292.1985.79366forward
CNT3070085Juglans regiaQuercus suber24.334.5186.67225forward
CNT3046375Juglans regiaPrunus dulcis45.1459.8988.28418forward
CNT3098188Juglans regiaSolanum tuberosum20.5238.3181.05190forward
CNT30715065Juglans regiaMalus domestica golden45.1429.487.08418forward
CNT30624536Juglans regiaDaucus carota42.3327.983.93392forward
CNT30704833Juglans regiaPrunus avium45.1458.5486.84418forward
CNT3022395Juglans regiaPopulus trichocarpa31.6471.2987.37293forward
CNT3050211Juglans regiaCucumis sativus38.4494.6884.55356forward

Expression of CNT30516669

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MAVISSSNLNSLVLQQTLNPTSGFPGMDHVWKFHTIPNKKDREIVSHQIKITLSAQEKRSR*

>peptide 2 (91 aa)
LGAADSLVQDGASEYQNRKRSESGATCHLSSRYQEPQWQGKMQVVHSQRRSYQCSCLRPCGQLVAGAKCPRARFWLHQVDQSQICPHDQDQ*

>peptide 3 (50 aa)
MAGQNASCSFSAKKLSMFLFKTMRPTGCRGKMSSGQVLVTSSGSKSNLSS*

Sequence

>CNT30516669
GCTGGGAGCTGCAGATAGTTTGGTCCAAGACGGTGCCTCTGAGTATCAGAATAGGAAAAGATCCGAGTCTGGAGCAACTTGTCATCTGAGTAGTAGATAC
CAGGAACCACAATGGCAGGGCAAAATGCAAGTTGTTCATTCTCAGCGAAGAAGTTATCAATGTTCTTGTTTAAGACCATGCGGCCAACTGGTTGCAGGGG
CAAAATGTCCTCGGGCCAGGTTTTGGTTACATCAAGTGGATCAAAGTCAAATTTGTCCTCATGATCAGGATCAATAGTCTGGATGTATAGTTTCCACTCA
GGATAGTTTCCAGCTGCAATTGAGTCATATAGATCTTGTGTGGCATGGCTGTGATTAGCTCCTCCAACCTTAATAGCCTCGTCCTCCAACAAACACTTAA
CCCCACAAGTGGGTTTCCAGGCATGGACCATGTCTGGAAATTTCATACCATCCCGAATAAAAAAGACAGGGAAATTGTTTCCCACCAGATCAAAATTACC
CTGAGCGCACAAGAAAAAAGGTCAAGATAGGAACAAATATAGCTTGAACAAGCTTAGAGTCATTAACCTTTATAGAGTTGAGAGAAATTAATTCAGTTGC
ATGAAATAAACTTTCTGAGATATTTTAAAGCAGCTACTAGTTCCAGGAAATGTTTTGCACCTAGATACAACGTCAATTTTTTTTTCTCTTACAGAATAAT
TAAATATGTTGTAAAAACCATTTTCTTGCAGCCCCCTACAAATATGTTGGCCAAAAAGATTTGAGATGGTAGTAATATGGTTATATAATTAAGTGGCTGT
TTGTGGCTCGGGCATTCCCTTTGAAAAAAAGTGCCCCCACCCCCCAAAAAAAAAATTCATCGCTAGTGTCAGACGCATGAATACCATGCAATACAGTCAA
CGTTTTAAACTCACCCAATATTAGGT