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Detailed information on CNT3051600


BLAST search results

BLAST vs Swiss-Prot:
sp|A2YH64|CATA2_ORYSI, E-value = 3e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317874Amborella trichopodaCorylus avellana17.6627.8786.7668forward
CNT30708847Amborella trichopodaGlycine max21.568.6487.9583forward
CNT30511681Amborella trichopodaSolanum lycopersicum2023.1985.7177forward
CNT308572Amborella trichopodaZea mays2026.5584.4277forward
CNT30714890Amborella trichopodaMalus domestica golden22.3430.684.8886forward
CNT30624929Amborella trichopodaDaucus carota20.2622.5488.4678forward
CNT30368346Amborella trichopodaSorghum bicolor2028.5285.7177forward
CNT30704829Amborella trichopodaPrunus avium22.3413.8586.0586forward
CNT30119031Amborella trichopodaCitrus clementina37.418.9779.86144forward

Expression of CNT3051600

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MSWVTSKKPFALAPLACTIRSGVRSLVKCASFSIK*

>peptide 2 (96 aa)
AKPRGSLIVSGLPRSWITVEKRTISGISTSQMRDVMGHLKETLCTCTPRMHNTLWCALPREMRKLLNQMIVLKKNRPCISAPTTTKRVLIHSCHQM*

Sequence

>CNT3051600
GCGAAACCACGAGGGTCTCTGATAGTTTCAGGGCTTCCACGCTCATGGATAACAGTTGAGAAGCGAACAATAAGCGGGATCAGCACAAGTCAGATGAGAG
ATGTCATGGGTCACCTCAAAGAAACCCTTTGCACTTGCACCCCTCGCATGCACAATACGCTCTGGTGTGCGCTCCCTCGTGAAATGCGCAAGCTTCTCAA
TCAAATGATAGTCCTCAAGAAGAATAGGCCCTGCATCAGTGCCCCAACAACAACAAAAAGGGTTTTAATTCATTCATGTCATCAGATGTAGAGAGAGAGT
AAATCGTTTTGGCCAAAGCCCGAGTATTTTGGCCGAGTCTATTTTCTAAACGCTGATATATAGGGAGTATTTTGGCCGAATCGAT