« Back to Amborella trichopoda search


Detailed information on CNT3051548


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549796Amborella trichopodaIpomoea triloba11.4434.0896.35137reverse complement

Expression of CNT3051548

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MRSPITRLSHLSYLSPRQCYSMKKEKWQCNVIVIYSIKSWLLREGKPFKRSPTSYSRKQALLN*

>peptide 2 (65 aa)
MLLVVLHTGAWESTPSLYVTNYFPLTMIGLGGESPPPFAEKGCDMGFEILDTQTTLGFGRVQDWP*

Sequence

>CNT3051548
TTGGGAAGTAGGACTCCTCTTTTTTGGATTTGATCAATGGTGAGCACTTTTTTGTAGAGTGCAATTCAACAGAAAACTTCGATTTCCCGGGGGATTGGGC
AAGTCCACGCCTTGGAAGCGAAAGGGAGAGGGGGATGTGATTTGGCAGGTCCCAAAAGAAAGAGGAAACTGACAAGTTTCCTGAGGCTTCAGGTGATCAT
ATGATGTTGTCTTCTCCTGCCCGGGGAAGATAAACGTGATGGAGAGTGTCGAACAAAGCCAGGAATCCTAACTCCTGATTGGTAATGTTTCTTCTGAAAT
TAGGAGACCAGGTCCTAGCTGATATCATATGGCTGAAATTGTCAGCCACAAGTTGAATTAGTGTCACAAGCCAGGCGAAAGAAGTTGTGAAACTGTTCCA
TAAGAGGTGTGTGACCAAGCCACACATCAGACCAGAAGCTAACCCTACTTCCCTCTCTTGGCCTAAACCAAATTTGTTGAAGGAAGAGATCCCGGCGGTG
GAGAAGGGACCGCCAAAAGTCGCATATGTTACTAGTAGTTCTACACACCGGAGCCTGGGAGTCCACCCCGTCACTGTATGTGACGAATTACTTCCCTCTA
ACGATGATTGGGTTGGGTGGTGAATCTCCACCACCATTTGCCGAGAAGGGCTGTGATATGGGATTTGAGATTTTGGATACCCAAACCACCCTGGGATTCG
GGCGAGTACAAGACTGGCCATGATATAAGATGGCATTTATGGCCTCCTTCACCCAACCAAAAGAAGTCGCGCATCTGGTACAACCGAGGCAATAGTGTGG
AAGAGGGACATCTGGTACACTGGGGTATTGGCTAAGGTAGGCTTGATGAGGATAAGCCTTCCAGCTTGAGAGAGAAATCTACCTTTCCATCCCGTAAACC
TCCTGTCAAGGTCGACGACGGAACGAACAACGAAACTTTACGACAACATTTTCGCACACGTTCACTTGCATCACATACACAAGTGCTCTCTGAACCGTGC
AATGAGGTCACCCATAACACGGCTCTCCCACTTGAGTTACCTTAGCCCCAGGCAATGCTATTCCATGAAAAAGGAAAAATGGCAGTGTAACGTTATAGTT
ATATATAGTATCAAAAGCTGGTTGCTGAGGGAGGGAAAGCCTTTCAAAAGGAGCCCAACTTCCTACAGTCGCAAGCAAGCCCTACTAAACTAAAGTAA