Detailed information on CNT30514517


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 2e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30402284Juglans regiaBeta vulgaris35.3294.5282.61207forward
CNT30623489Juglans regiaDaucus carota34.6430.6282.76203forward
CNT30620550Juglans regiaCajanus cajan35.6717.4582.78209forward
CNT3038822Juglans regiaCucumis melo37.248.9984.4218forward
CNT30335392Juglans regiaCynara cardunculus34.8125.0381.37204forward

Expression of CNT30514517

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MKLMHCTWRLLSNPMIRTNALGYSFLHSSSSFRT*

>peptide 2 (52 aa)
MHWGIPSCTPQALSGPEKSRCSQTWGASTLPSSDHRSTLEICCSHGKRSLCG*

>peptide 3 (54 aa)
MAALAGEALLTEAIAVDEMMEEAIFYVYRPHTALALGTLLKGFCLLIVSTLIEQK

>peptide 4 (94 aa)
MQERKGIQLDVAWRLVGNETDALHLALVVKSNDTNECIGVFLLALLKLFQDLRRVGAAKHGELPHYPVATIVVPWRSVVLTVNEAFAGNREGRG*

Sequence

>CNT30514517
CCACAAAATAATTAAACAAAATTCAGACAAAAATAAGAATTCAAATGTCTGGAGTACGTTGAAAGACAAAACATGAACTTCAATCGCAACAAATTAAAAG
CTAGCAAGACATGCAGGAAAGAAAAGGGATTCAATTAGACGTGGCTTGGAGGCTTGTAGGCAATGAAACTGATGCACTGCACTTGGCGCTTGTTGTCAAA
TCCAATGATACGAACGAATGCATTGGGGTATTCCTTCTTGCACTCCTCAAGCTCTTTCAGGACCTGAGAAGAGTCGGTGCAGCCAAACATGGGGAGCTTC
CACATTACCCAGTAGCGACCATCGTAGTACCCTGGAGATCTGTTGTTCTCACGGTAAACGAAGCCTTTGCGGGTAACAGGGAAGGCCGAGGCTGACTTGA
GACCGGTGAAAGGTGCGACCATGGCAGCTTTAGCCGGAGAGGCTCTGCTAACGGAGGCAATAGCCGTGGATGAGATGATGGAGGAAGCCATTTTCTATGT
TTACCGACCACACACAGCTTTGGCTTTGGGAACACTTTTGAAAGGCTTTTGCTTGCTGATTGTTTCGACTCTTATAGAACAGAAAC