CANTATAdb - search

Detailed information on CNT30513636

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 1e-103

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30315761	Juglans regia	Corylus avellana	72.67	37.3	89.29	476	forward
CNT3019830	Juglans regia	Citrullus lanatus	70.99	42.01	85.81	465	forward
CNT3074281	Juglans regia	Brassica juncea	69.47	38.33	86.59	455	forward
CNT30620193	Juglans regia	Cajanus cajan	69.77	71.18	87.96	457	forward
CNT30153779	Juglans regia	Prunus persica	70.38	47.33	87.85	461	forward

Expression of CNT30513636

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSRVIVFPVRVLTKICMPPRRRSTRWRVDSFWIL*

>peptide 2 (49 aa)
MPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICICGKQHHQRRLLDTT

Sequence

>CNT30513636
TTAGAATATAAAACTGCAAACCAAATTTATTTAGATGGCCCCAACAGGGCCTTAACCATATAAGGTGATTGTAGCATAACACAAACTTAAAAACATTTAA
ATTTATTTCTTAAAAACATAAGATTCACGGGAGCTTGGGGCCAATCCTTCAGAACCCACCACGGAGACGGAGGACAAGGTGAAGGGTAGACTCCTTTTGA
ATATTGTAGTCCGCAAGGGTGCGACCATCCTCCAGTTGCTTGCCGGCAAAAATCAGCCTCTGCTGGTCAGGTGGGATCCCCTCCTTGTCCTGGATCTTGG
CCTTCACATTGTCGATGGTGTCCGAGCTCTCCACCTCAAGGGTGATCGTCTTTCCCGTGAGGGTTTTGACGAAAATCTGCATGCCACCACGGAGACGGAG
CACGAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGGCGAGGGTCCTGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGT
GGGATGCCTTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTTTTCACGA
AGATTTGCATCTGTGGAAAACAACATCATCAGAGAAGACTTTTAGATACGACGAC