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Detailed information on CNT30513516


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 3e-140

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30528549Juglans regiaEucalyptus grandis58.452.3490.63459forward
CNT30157656Juglans regiaPistacia vera77.3568.784.7608forward
CNT30120625Juglans regiaCitrus clementina58.442.0389.11459forward

Expression of CNT30513516

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MPSLSWILAFTLSMVSELSTSRVIVFPVRVLTKICMPPRRRSTRWRVDSFWIL*

>peptide 2 (38 aa)
MPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICICGK

Sequence

>CNT30513516
TTAGAATATAAAACTGCAAACCAAATTTATTTAGATGGCCCCAACAGGGCCTTAACCATATAAGGTGATTGTAGCATAACACAAACTTAAAAACATTTAA
ATTTATTTCTTAAAAACATAAGATTCACGGGAGCTTGGGGCCAATCCTTCAGAACCCACCACGGAGACGGAGGACAAGGTGAAGGGTAGACTCCTTTTGA
ATATTGTAGTCCGCAAGGGTGCGACCATCCTCCAGTTGCTTGCCGGCAAAAATCAGCCTCTGCTGGTCAGGTGGGATCCCCTCCTTGTCCTGGATCTTGG
CCTTCACGAAGATCTGCATGCCACCGCGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTTTGGATATTATAATCGGCGAGGGTTCGGCCGTCCTCCAG
CTGCTTGCCGGCGAAAATAAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGCTCTCCACC
TCCAGGGTGATCGTCTTTCCCGTGAGGGTTTTGACGAAAATCTGCATGCCACCACGGAGACGGAGCACGAGATGGAGGGTTGATTCCTTCTGGATATTGT
AGTCGGCGAGGGTCCTGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGGATGCCTTCCTTATCCTGGATCTTGGCCTTAAC
GTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTTTTCACGAAGATTTGCATCTGTGGAAAAC