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Detailed information on CNT30513311


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-114

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30728102Juglans regiaCorchorus capsularis56.2644.1385.41665forward
CNT30568720Juglans regiaActinidia chinensis54.9147.7284.28649forward
CNT3066366Juglans regiaSelaginella moellendorffii55.4177.6184.12655forward

Expression of CNT30513311

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MPSLSWILAFTLSMVSELSTSRVMVFPVRVLTKICMPPRRRRTRWRVDSF*

>peptide 2 (50 aa)
MEKGITFVQRLDLTTNVLTYLRRTTKGPNKYTEKYFQQKGRRDTADIISP*

>peptide 3 (89 aa)
MVSELSTSRVMVFPVKVQSRLLLYVVIGEGTPILQLLPGEDEPLLIRRNAFLVLDLGLYVVDGIGTLDLEGDGLPGEGFDEDLHATAET*

>peptide 4 (74 aa)
MERGLLLNIVVGKGATVLQLLPGEDQTLLIRRNTFLVLDLGLNVVNGVGALDLESDGLAGEGFDEDLHVSEILK*

>peptide 5 (83 aa)
MEGGLLLNVIVGKGATILQLLAGEDQTLLIGRDTFLVLDLGLDVVDGVGTLDLEGDGLPGEGVLTKICIPPRRRRTRWSVDSF*

>peptide 6 (36 aa)
QELNQDERRNLNKLSHYFSFRYGKGNYICPKTRFNY*

Sequence

>CNT30513311
CAGGAATTAAATCAAGATGAACGCAGGAATTTGAACAAACTAAGTCACTATTTTTCATTTAGGTATGGAAAAGGGAATTACATTTGTCCAAAGACTCGAT
TTAACTACTAATGTTCTTACTTATTTAAGGAGAACAACCAAGGGACCGAACAAATACACTGAAAAATACTTCCAACAGAAAGGCAGGCGAGACACAGCCG
ACATAATATCACCATAAAGAAAAAGCATCTAGAAATCACCACCACGGAGGCGAAGGACGAGGTGGAGGGTTGACTCCTTTTGAATGTTGTAATCAGCTAG
GGTACGCCCATCCTCCAATTGCTTCCCGGCAAAGATGAGCCTTTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTCACGTTGTCGATG
GTGTCCGAGCTCTCCACCTCCAGAGTGATGGTTTTTCCTGTCAAGGTGCAAAGTCGACTCCTTCTGTATGTTGTAATCGGCGAGGGTACGCCCATCCTCC
AATTGCTTCCCGGCGAAGATGAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTTACGTTGTCGATGGTATCGGAACTCTCGA
CCTCGAGGGTGATGGTCTTCCCGGTGAGGGTTTTGACGAAGATCTGCATGCCACCGCGGAGACGTAGGACGAGATGGAGGGTGGACTCCTTCTGAATGTT
ATAGTCGGCAAGGGTGCGACCATCCTCCAATTGCTTGCCGGCGAAGATCAGACGCTGCTGATCGGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTG
ACGTTGTCGATGGTGTCGGAACTCTCGACCTCGAGGGTGATGGTCTTCCCGGTGAGGGGGTTTTGACGAAGATCTGCATCCCACCACGGAGACGGAGGAC
GAGATGGAGCGTGGACTCCTTCTGAATATTGTAGTCGGCAAGGGTGCGACCGTCCTCCAACTGCTTCCCGGCGAAGATCAAACGCTGCTGATCCGGAGGA
ATACCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTGACGAAGA
TCTGCATGTTTCAGAAATTCTAAAGTAGCGTCGCAGTGAATGAAATTATGAGAGAGAGAGAGAGAGAGAGAGAGAGTTTATG