Detailed information on CNT30513228


BLAST search results

BLAST vs Swiss-Prot:
sp|Q42662|METE_PLESU, E-value = 7e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673222Juglans regiaSetaria viridis32.6540.2585.04254forward
CNT30521178Juglans regiaSetaria italica13.1120.8685.29102forward
CNT30375849Juglans regiaArabidopsis thaliana37.1525.884.08289forward
CNT30403349Juglans regiaBeta vulgaris17.9940.2390.71140forward
CNT30504596Juglans regiaNicotiana attenuata29.8237.7284.48232forward
CNT30249492Juglans regiaAvena sativa19.2843.9983.33150forward
CNT30136078Juglans regiaLolium perenne18.7756.3784.93146forward
CNT30650401Juglans regiaRosa chinensis42.2937.3487.23329forward
CNT30211728Juglans regiaHelianthus annuus26.9979.5582.86210forward
CNT30721247Juglans regiaTriticum spelta32.948.7681.25256forward
CNT30367469Juglans regiaSorghum bicolor42.9347.9285.33334forward
CNT3027382Juglans regiaPopulus trichocarpa41.6566.9490.74324forward
CNT30148668Juglans regiaBrachypodium distachyon25.9666.2385.64202forward
CNT30118099Juglans regiaOryza nivara32.6531.1783.07254forward

Expression of CNT30513228

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MFLRAGLTSEYLRVLSPQSGLTHKMFVSSTASILLIRSAISSVDGILGEWMS*

>peptide 2 (36 aa)
MSRGRTSASHGQSFKTLQQSSGLLQWSRVHPASNIP*

>peptide 3 (70 aa)
MWEQELQGESEIRLVLNKMKEIQPPKLILYNSLSTGKLGAEELGSSNHVFESWLNLRILTSLESTVRINP*

>peptide 4 (65 aa)
MARVSRHCNKVLDYCNGVVFTRPAISHEVRLVDVGTRAPRGKRDKARTEQNEGDSTSQANLIQLT*

Sequence

>CNT30513228
ATTTATTCGGGTTTCAACAACAGCTATAGTCATATATAAGTCTGTTGAACCCATTTTGTTCTTGTGGTGTACCTATTGAAGTCCTTTAGTACTAACGTTA
TTGGGGCCTTGCAATAATCATGGTGGGAGCCAAGCGAACCGCATGCAAATTTGTTCCCCATTGAAGGTGATCTACATATTTATCTAGGAAAGGTGTGAAG
TAGTAAGACAACGAGAGGAACAATAATGAGCCGAGGAAGAACATCAGCAAGCCATGGCCAGAGTTTCAAGACACTGCAACAAAGTTCTGGACTATTGCAA
TGGAGTCGTGTTCACCCGGCCAGCAATATCCCATGAGGTAAGGCTCGTGGATGTGGGAACAAGAGCTCCAAGGGGAAAGCGAGATAAGGCTCGTACTGAA
CAAAATGAAGGAGATTCAACCTCCCAAGCTAATCTTATACAACTCACTTAGCACTGGCAAGCTGGGTGCGGAGGAGCTTGGCAGCAGCAACCATGTTTTT
GAGAGCTGGCTTAACCTCAGAATACTTACGAGTCTTGAGTCCACAGTCAGGATTAACCCATAAGATGTTTGTCTCAAGCACTGCAAGCATCTTGTTAATA
CGGTCGGCAATCTCTTCGGTCGATGGTATTCTAGGAGAGTGGATGTCATAGACACCAGGGCCAATTCCAGCACCGTACTTGACTCCCTCACGGAAAACTG
ACAAGAGCTTCTCATCAGAACGGGAGTTCTCAATGGTGATCACATCAGCATCCATGTCAATAATTGAGTGGATGATAT