Detailed information on CNT30513000


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 8e-76

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30405820Juglans regiaBeta vulgaris46.443.8682.76232forward
CNT30143941Juglans regiaMedicago truncatula52.658.7183.65263forward
CNT30203835Juglans regiaHelianthus annuus5658.3378.93280forward
CNT30332479Juglans regiaDioscorea rotundata19.434.2885.5797forward
CNT30149525Juglans regiaBrachypodium distachyon21.635.7683.33108forward

Expression of CNT30513000

Peptides detected in this lncRNA

>peptide 1 (88 aa)
GKTTYLINNDLLNFTACLRTPKVGSSAPSSPSSCECLSQALLPVIQIPRDQMTSYPSDRRHIGGKPALRLQPSTYLRIRKIQRQAGMP*

Sequence

>CNT30513000
GGTAAAACGACTTACTTGATCAATAATGATCTGTTGAATTTTACAGCTTGTCTTCGAACTCCGAAAGTGGGGTCATCTGCTCCTTCAAGCCCTTCCTCTT
GCGAATGTCTGTCACAAGCACTGCTGCCTGTGATCCAGATTCCAAGGGATCAGATGACATCATATCCCAGTGATCGAAGACACATTGGGGGAAAGCCTGC
CCTGAGGTTGCAGCCCTCAACGTACTTGAGAATCCGAAAGATTCAACGACAGGCAGGTATGCCTTGATGTTGTAAAGAGGGGTACCAGGCCTCTGGATTT
CCTCAAACACATGCCCACGTTTCTGGAGCTTGTATTTCCACCAAGTACACAGGTTCAAGAAGCCTGGGTTTGGCAGTCAGCTGGGAAGCATATATAACCC
TCCTGGCAGTTGGAATGACCTGACCACCACCTCTGTGGATGGCATCGGAATGTAGAACCACATCACAGACTTCAAAGCAGATACCTCTCATGTTTTCTTC