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Detailed information on CNT30512729


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674834Juglans regiaSetaria viridis27.744.4687.02285forward
CNT30547574Juglans regiaIpomoea triloba23.9169.387.8246forward
CNT30372986Juglans regiaArabidopsis thaliana48.148.4382.22495forward
CNT30276060Juglans regiaChenopodium quinoa33.1453.7986.22341forward
CNT30379936Juglans regiaManihot esculenta24.5975.7586.96253forward
CNT30405823Juglans regiaBeta vulgaris20.847.5685.05214forward
CNT30488117Juglans regiaOlea europaea25.3653.4887.74261forward
CNT30711584Juglans regiaGlycine max34.215084.09352forward
CNT30191304Juglans regiaSecale cereale78.3361.9581.76806forward
CNT30300473Juglans regiaTriticum aestivum68.4272.7380.97704forward
CNT30224354Juglans regiaHordeum vulgare50.0599.2382.14515forward
CNT30395070Juglans regiaTriticum turgidum45.9761.8383.09473forward
CNT30561656Juglans regiaActinidia chinensis78.0457.3684.18803forward
CNT30510505Juglans regiaSolanum lycopersicum57.1454.1485.03588forward
CNT30552635Juglans regiaOryza glaberrima44.944.5184.85462forward
CNT30441158Juglans regiaAegilops tauschii71.0496.3180.85731forward
CNT30309793Juglans regiaCamelina sativa56.8575.1979.66585forward
CNT3059659Juglans regiaArabidopsis lyrata19.7346.7783.74203forward
CNT30135610Juglans regiaLolium perenne34.6942.282.63357forward
CNT3014085Juglans regiaZea mays29.3549.5184.77302forward
CNT30605685Juglans regiaGossypium raimondii42.7657.5987.27440forward
CNT30684236Juglans regiaTriticum urartu54.0367.6482.55556forward
CNT30596122Juglans regiaOryza meridionalis32.5648.4182.69335forward
CNT30369654Juglans regiaOryza glumipatula43.6351.0284.86449forward
CNT30107537Juglans regiaOryza longistaminata32.2636.1385.84332forward
CNT30100253Juglans regiaOryza rufipogon44.941.9284.63462forward
CNT30575129Juglans regiaOryza barthii34.014385.14350forward
CNT30497456Juglans regiaDigitaria exilis27.1195.5586.02279forward
CNT30116094Juglans regiaOryza nivara44.952.584.63462forward
CNT30604019Juglans regiaOryza punctata25.5677.8184.41263forward

Expression of CNT30512729

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MASECRTTSQTSKQIPLMFSSANAPSLEAH*

>peptide 2 (30 aa)
MASASPSSKGRASMYKRLCLLGDLLITVRED

>peptide 3 (31 aa)
MSKEKTSQEYKNADKANSYLYFAQRSHITYL*

>peptide 4 (37 aa)
MTSYPSDRRHIGGKPALRLQPSTYLRIRKIQRQAGMP*

>peptide 5 (60 aa)
MPTFLVKNTVDTTKCLFRSLYLHQVHRFKKPGFGSQLGSIYNPPGSWNDLTTTSVDGIGM*

Sequence

>CNT30512729
GCAAATGTAAAACCACAATCACTATAGGGTTAAGACCATCAAATCAAATTGTTCGATAACCAGACATAGCAAAAAACATAACAAAAAGGCGATCAAAATC
CAATGGGATTCACCTAAAAATGTCGAAAGAAAAAACCTCACAGGAATATAAAAATGCTGACAAGGCCAACAGTTATCTCTACTTTGCTCAACGATCTCAC
ATAACGTATTTATAGCTTGTCTTCGAACTCCGAAAGTGGGGTCATCTGCTCCTTCAAGCCCTTCCTCTTGCGAATATCTGTCACAAGCACCGCTGCCTGT
GATCCAGATTCCAAGGGATCAGATGACATCATATCCCAGTGATCGAAGACACATTGGGGGAAAGCCTGCCCTGAGGTTGCAGCCCTCAACGTACTTGAGA
ATCCGAAAGATTCAACGACAGGCAGGTATGCCTTGATGTTGTAAAGAGGAGTACCAGGCCTCTGGATTTCCTCAAACACATGCCCACGTTTCTGGTTAAG
AACACTGTAGATACCACCAAGTGCCTGTTCAGGAGCTTGTATCTCCACCAAGTACACAGGTTCAAGAAGCCTGGGTTTGGCAGTCAGCTGGGAAGCATAT
ATAACCCTCCTGGCAGTTGGAATGACCTGACCACCACCTCTGTGGATGGCATCGGAATGTAGAACCACATCACAGACTTCAAAGCAGATACCTCTCATGT
TTTCTTCAGCCAATGCACCTTCCTTAGAAGCCCACTGAAACCCGGCCACAACAGAATCCTTAATTTCATTCAGGTACTGAACTCCCTTACACATATCCAC
TACCATATTAGGGCCAGTAGTCTCCGGGCCAAAACACCAAATTTTCTTCGCAAGATCCTTATCCCAACCAAACTCCTCAGACAAGATTTTGGAACGAACT
TTAGGATCATCCCTTGGACCGATACGGCCATCATCAATGGCCTCTGCAAGCCCCTCTTCCAAGGGACGTGCTTCCATGTACAAACGGTTGTGCTTGTTGG
GTGACTTGCTCATCACGGTACGGGAAGAC