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Detailed information on CNT30512480


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3094104Juglans regiaSolanum tuberosum37.0835.4979.81208forward
CNT30115784Juglans regiaOryza nivara14.9735.1584.5284forward

Expression of CNT30512480

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MMGRVRDLRVEEERVKNLEGLIVRLGSGSWGMESLGLVVEEEREAEAMTKGLEEDMSMLAMAAAC*

>peptide 2 (74 aa)
STFFLPSASFCSTSACVSFFILLRAADISALAAFMTAAACSSSCFTSPDVSFTLFSFSLMAASLSSMNFPRGEK*

>peptide 3 (82 aa)
LHFLPALGQLLLHLCLRLLLHLVEGCRYLGPGGLHDGRGLLLQLLHLSRCVLHAVQLLSNGCVSVIHEFSQRREVELVEGEL*

Sequence

>CNT30512480
CCTCCACTTTCTTCCTGCCCTCGGCCAGCTTCTGCTCCACCTCTGCCTGCGTCTCCTTCTTCATCTTGTTGAGGGCTGCCGATATCTCGGCCCTGGCGGC
CTTCATGACGGCCGCGGCTTGCTCCTCCAGCTGCTTCACCTCTCCCGATGTGTCCTTCACGCTGTTCAGCTTCTCTCTAATGGCTGCGTCTCTGTCATCC
ATGAATTTTCCCAGAGGAGAGAAGTAGAGCTTGTCGAGGGCGAACTGTAGGAACAAGAACTCGGCCACGATGATGGGGAGGGTGAGGGATTTGAGAGTGG
AGGAGGAGAGGGTGAAGAATTTGGAGGGCTTGATTGTGAGGTTGGGAAGTGGGAGTTGGGGAATGGAGAGTTTGGGTTTGGTGGTGGAAGAGGAGAGAGA
GGCAGAGGCTATGACGAAGGGTTTGGAGGAGGACATGAGCATGTTGGCCATGGCTGCTGCTTGCTGACAGTGGTAGTGAATGTCTGTCAATGGAGTTTTG
CTGTGTTTGGAGGATGTGTGTGAGAATCAGATATTGGTTGTGAGAGATTGAGACTGGGAAC