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Detailed information on CNT30511958


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374334Solanum lycopersicumArabidopsis thaliana22.521.0993.3375forward
CNT30162031Solanum lycopersicumPistacia vera21.325.991.5571reverse complement
CNT3099072Solanum lycopersicumSolanum tuberosum64.2619.5897.2214forward
CNT30332839Solanum lycopersicumDioscorea rotundata33.636.690.18112forward

Expression of CNT30511958

Peptides detected in this lncRNA

>peptide 1 (35 aa)
IIVRHYVPRSSKKTDSSYSSFSFRIGSSLVWSFFH*

>peptide 2 (33 aa)
MVSPFSSSSSSREGLFYRLPLPFTLIWSLSSKK*

Sequence

>CNT30511958
GCATAATTGTCCGACACTACGTTCCTCGATCTTCAAAGAAAACTGACTCCTCCTACTCCTCCTTCTCCTTTAGGATAGGATCCTCCTTGGTTTGGTCCTT
CTTTCACTAATGGTCTCACCATTTTCTAGTAGTAGTAGTTCGCGCGAGGGACTTTTCTATCGCTTGCCCTTGCCTTTCACTCTCATTTGGTCTCTTTCTT
CTAAAAAATAAAGTCTTAGTCTGTATGGGCATTCTGGGCAGGCCGCAATAAGTCGCTAGTCGAAGGTTTAGACCAATCGCAATTCATCACCATCTTGCCC
GCCTCCAATTGATGACTGGCTATTATATAAGTG