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Detailed information on CNT30511946


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378675Solanum lycopersicumArabidopsis thaliana28.7118.9998.01151forward
CNT30636182Solanum lycopersicumCapsicum annuum12.3624.8198.4665reverse complement
CNT30223244Solanum lycopersicumHordeum vulgare50.1924.3396.21264forward
CNT30655404Solanum lycopersicumRosa chinensis48.6729.9498.44256reverse complement
CNT30683092Solanum lycopersicumTriticum urartu56.6513.4895.64298forward
CNT30725625Solanum lycopersicumLupinus angustifolius57.7917.4893.75304forward

Expression of CNT30511946

Peptides detected in this lncRNA

>peptide 1 (57 aa)
VGSRLSFFGPTYDRRKMSSSLFFTYTGRKGYASKPLPGRRAPRTRRRRSTIHSRDSY*

Sequence

>CNT30511946
ATGTTGGAAGCCGACTCTCGTTCTTTGGACCAACCTATGACCGAAGAAAAATGAGTTCGTCACTCTTTTTCACATACACCGGGAGAAAGGGTTACGCTAG
CAAGCCCCTCCCTGGCCGGAGAGCCCCCAGGACAAGGAGGCGGCGATCAACCATCCACTCTCGAGATTCATATTGATCAATAGATCTCCGCGTCCTGCCA
GTTCGCTAAGTAGACTCACTCTACCGAGGGGCAACAAAGCTTACACTTGTTCACTAATTATGACGGTTCACCAGGGCCTCTTTCCTCCTCCCTTTTCTGC
TCACTCGTAGGGGTCGGGACCCCCACAAAGGGGGAGGGAGTCGACTGAACATCTCAGCCATTGGCGGGAATTTCGCCCGCATCCGATCCCCAATTCTTGT
TCACCCCGGATGATCGTGTTGGGTGAATTTTGACCTCGTACGATCGTGTCGGGTGAGCAACAGCCGCTTCGTCACAGTACTTACTTATGGGCTAACAGGT
CACACTTTGGCCAAGTATCCTACAAA