« Back to Solanum lycopersicum search


Detailed information on CNT30511842


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8S8T4|UXS4_ARATH, E-value = 2e-87

BLAST vs NONCODE:
NONSLYT000337, E-value = 5e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30268105Solanum lycopersicumChenopodium quinoa75.9841.4882.18348forward
CNT3021247Solanum lycopersicumCitrullus lanatus46.9423.3482.33215forward
CNT3068683Solanum lycopersicumQuercus suber66.1661.5979.87303forward
CNT30486152Solanum lycopersicumOlea europaea29.9115.1483.94137forward
CNT30504948Solanum lycopersicumNicotiana attenuata89.9698.190.29412forward
CNT3098150Solanum lycopersicumSolanum tuberosum99.1392.6597.14454forward
CNT30590847Solanum lycopersicumMusa acuminata34.7234.7983.02159forward
CNT3084565Solanum lycopersicumVigna radiata57.6415.6279.55264forward
CNT30539234Solanum lycopersicumBrassica napus40.6120.3380.65186forward
CNT30145616Solanum lycopersicumMedicago truncatula58.358.8182.77267forward
CNT30261302Solanum lycopersicumBrassica rapa39.7435.281.87182forward
CNT30134072Solanum lycopersicumLolium perenne24.2415.2984.68111forward
CNT30231964Solanum lycopersicumAnanas comosus38.6514.5181.36177forward
CNT30718631Solanum lycopersicumMalus domestica golden43.0134.3281.73197forward
CNT30411763Solanum lycopersicumPapaver somniferum50.4420.584.85231forward
CNT30570592Solanum lycopersicumVitis vinifera18.3426.0184.5284forward
CNT3055709Solanum lycopersicumAmborella trichopoda53.4937.4682.86245forward
CNT30583952Solanum lycopersicumEchinochloa crusgalli24.2424.3485.59111forward
CNT30726386Solanum lycopersicumLupinus angustifolius58.5229.8182.46268forward
CNT3050773Solanum lycopersicumCucumis sativus27.9522.7882.81128forward

Expression of CNT30511842

Peptides detected in this lncRNA

>peptide 1 (37 aa)
TNGINIAPISLSLRMLQWITINFTCASNKKPSSHSFC*

Sequence

>CNT30511842
ACCAATGGGATTAACATTGCCCCAATAAGTCTCAGCCTGAGGATGTTGCAATGGATCACCATAAACTTCACTTGTGCTAGTAATAAGAAACCTAGCTCCC
ACTCTTTTTGCTAATCCCAACATATTCATTGTTCCCATCACATTTGATATAATAGTCTTGACTGGATTAAACTTGTAATGAACAGGAGAAGCGGGACAAG
CTAGATGATAAATCTGATCGACTTCTAACAAAATCGGCTCAACGACATCGTGTCGAATAAGTTCAAACCTTGGGTTCTTGAAATGGTGCAACAAATTCTC
TTTTTTACCTGTAAAAAAATTATCAACAACAATAACACTATCTCCTCTTGCTATTAATCTATCCACCAAATGGCTCCCAACAAATCCTGCTCCTCCTGTT
ACTAATATTCTCTTACTCTTTCCTTTCAATCCCAATGGAACCTTTCCACCTACAATAA