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Detailed information on CNT30511784


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8S8X4|PSAA_ATRBE, E-value = 4e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696451Solanum lycopersicumOryza sativa52.516.292.46345forward
CNT30730522Solanum lycopersicumCorchorus capsularis53.4250.6594.59351forward
CNT30382315Solanum lycopersicumManihot esculenta33.1810.3391.28218forward
CNT30202040Solanum lycopersicumPisum sativum42.3128.1791.01278forward
CNT3093954Solanum lycopersicumSolanum tuberosum20.248.1295.49133forward
CNT30221828Solanum lycopersicumHordeum vulgare47.3435.4690.35311forward
CNT3077259Solanum lycopersicumBrassica juncea20.2414.9393.98133forward
CNT30265789Solanum lycopersicumBrassica rapa20.2416.4293.23133forward
CNT30486Solanum lycopersicumZea mays52.5112.4891.88345forward
CNT30609661Solanum lycopersicumGossypium raimondii20.247.7494.74133forward
CNT30229782Solanum lycopersicumAnanas comosus12.7937.3398.8184forward
CNT30689226Solanum lycopersicumTriticum urartu35.7712.6892.77235forward
CNT30595862Solanum lycopersicumOryza meridionalis42.9225.7591.49282forward
CNT30360010Solanum lycopersicumLactuca sativa25.8815.8395.29170forward
CNT30369168Solanum lycopersicumOryza glumipatula33.9461.192.38223forward
CNT30430934Solanum lycopersicumPapaver somniferum53.425.3795.73351forward
CNT3057361Solanum lycopersicumAmborella trichopoda41.75.4588.32274forward
CNT30149145Solanum lycopersicumBrachypodium distachyon52.5119.2191.3345forward
CNT30585620Solanum lycopersicumEchinochloa crusgalli52.516.7292.75345forward

Expression of CNT30511784

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MTSPSMPCGNDSSGITTFTTTTLSIDHAS*

>peptide 2 (50 aa)
MNCLNKIIQSIPCFERTLQGPNGPHICLFHSVENQFYGIDAYDLPLYALR*

>peptide 3 (31 aa)
MTRSGSFLERSFYGIPIYKNFNFWFRRTNNH*

Sequence

>CNT30511784
TTGGAAGATAAAAATCCTTTATTGATTAGCCCATAAACTGACCTAGGTAAATCCATCAACTCCATTGGATTATTCCTTCTGACTAAGCATATGAACCATG
AATTGTCTTAATAAGATAATTCAATCAATCCCTTGTTTTGAAAGAACTCTTCAAGGACCAAACGGTCCCCATATATGTCTTTTTCATTCCGTCGAAAATC
AATTTTACGGTATAGACGCTTATGACCTCCCCCTCTATGCCTTGCGGTAATGATTCCTCTGGCATTACGACCTTTACCACAACGACGCTGTCCATAGATC
ACGCTTCATAATTAGAAAAACGAGCACCGTGGAAATACATGCCGCTCAGCCAAAGAAAGATGATGGAGAGTTGACCGAAATGTGCACTAAATACTTTTCG
AGAGATCTCCTCCAAATCACTGGTATGGCTATCGAAATCGTGAGCATCAGCATGTAGGTTCCAGATCCAAGTGGTAGTATCAGGCCCTTTAGCTATTGTT
CTTGAGAAATGACCCGGTCTGGCTCATTCCTCGAAAGAAGTTTTTACGGGATCCCTATCTACAAAAATTTTAACTTCTGGTTCCGGCGAACGAATAATCA
TTGAGTCCTCCTCTTTCCGGACAACACATACAAAGAGACCCGCCAACAGTCAAATAA