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Detailed information on CNT30511668


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3C1M2|RR11_NICSY, E-value = 3e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693928Solanum lycopersicumOryza sativa35.222.5486.79106forward
CNT30550215Solanum lycopersicumIpomoea triloba70.764.6593.43213forward
CNT30618863Solanum lycopersicumSesamum indicum94.686.0689.12285forward
CNT30541469Solanum lycopersicumBrassica napus46.519.1588.57140forward
CNT30555953Solanum lycopersicumOryza glaberrima35.2226.1786.79106forward
CNT30228020Solanum lycopersicumAnanas comosus67.1114.6186.14202forward
CNT30202977Solanum lycopersicumHelianthus annuus26.5815.1593.7580forward
CNT30689031Solanum lycopersicumTriticum urartu33.221.7988100forward
CNT3059026Solanum lycopersicumAmborella trichopoda71.114.9189.25214forward
CNT30585636Solanum lycopersicumEchinochloa crusgalli34.881.8384.76105forward

Expression of CNT30511668

Peptides detected in this lncRNA

>peptide 1 (36 aa)
SVPLLVPLNPKINTEDQETTRPRTSVTVTMVLLKLA*

Sequence

>CNT30511668
AGTGTTCCTCTTCTCGTACCTTTGAATCCAAAAATTAACACTGAGGACCAAGAAACTACTCGACCCCGTACATCTGTAACAGTGACAATGGTATTATTGA
AACTTGCTTGAACATGAATAACTCCCTTTGGTATTCTACGTGCACCCTTACGTGAACTAATACGTCCATTCCGACGCGAACTAATTTTTGGTATAGCTTT
TGCCATATTTTATCATCTAGTAAATATGAGTCAGAGATATATGGATATATCCATTTCATGTCAAAACAGATTCTTTATTTGTACATCGGCTCTTCTGGCA
A