« Back to Solanum lycopersicum search


Detailed information on CNT30511651


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30501326Solanum lycopersicumCoffea canephora63.912.8592.03301reverse complement

Expression of CNT30511651

Peptides detected in this lncRNA

>peptide 1 (47 aa)
SKQKKVNPTEIRDRLIQTFDCKSIIMAQRNHPGLVWPQLQLLALQKA*

>peptide 2 (40 aa)
MRKKGPVNSIALSFPGLLSKERPSQGRTRGQSKLGWGIEP*

Sequence

>CNT30511651
CAAGCAAACAAAAAAAAGTAAATCCAACAGAAATCAGGGATCGATTGATCCAAACGTTCGACTGTAAATCGATTATTATGGCTCAACGAAATCATCCAGG
GTTGGTGTGGCCACAGCTACAACTACTGGCGCTTCAAAAGGCTTAGATTCTAAGGGCGCTACTGAAAGCCTTTTTTTAGGTCCTGTAATAGGGAGGTGTA
AGCCTCGAAAGCCTTTGGTACTTCGGTAGGGCGAGCAGCCCTTAAACCAAAAAAAAGGGAGTCTCTGACTTCCTTCCCCTATTTTTTTTATGCATTTCAT
TCTCTATTTGGCCCGCTTCAAACAAAATGAGAAAAAAGGGTCCGGTCAATAGCATAGCTCTTTCTTTCCCCGGTCTCCTTTCGAAGGAGAGGCCTTCACA
AGGAAGGACCCGGGGCCAGAGCAAGTTGGGTTGGGGTATAGAGCCGTAAGCGCGGTGGGGGGTGACAGAGG