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Detailed information on CNT30511593


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675387Solanum lycopersicumSetaria viridis21.0433.7484.67137forward
CNT30524663Solanum lycopersicumSetaria italica21.0423.5489.05137forward
CNT30641615Solanum lycopersicumNymphaea colorata23.227.2693.38151forward
CNT30549212Solanum lycopersicumIpomoea triloba28.736.294.12187forward
CNT30272552Solanum lycopersicumChenopodium quinoa58.6830.3786.13382forward
CNT30730518Solanum lycopersicumCorchorus capsularis52.8434.8991.57344forward
CNT30632284Solanum lycopersicumVigna unguiculata30.7224.4288.5200forward
CNT30195089Solanum lycopersicumPisum sativum23.968.9891.67156reverse complement
CNT30290333Solanum lycopersicumTriticum aestivum14.4424.891.4994forward
CNT30220801Solanum lycopersicumHordeum vulgare21.0435.3188.32137forward
CNT30397780Solanum lycopersicumTriticum turgidum21.0439.3788.32137forward
CNT30569398Solanum lycopersicumActinidia chinensis58.9919.6591.41384forward
CNT30552690Solanum lycopersicumOryza glaberrima21.048.9589.05137forward
CNT30208971Solanum lycopersicumHelianthus annuus40.464.4692.78263forward
CNT30720843Solanum lycopersicumTriticum spelta7.6823.269650forward
CNT30347837Solanum lycopersicumEragrostis tef21.0417.7786.13137reverse complement
CNT30620564Solanum lycopersicumCajanus cajan30.883.8891.04201reverse complement
CNT30410483Solanum lycopersicumPapaver somniferum58.5318.6288.71381forward
CNT30642274Solanum lycopersicumCannabis sativa21.6617.2689.36141reverse complement
CNT3037013Solanum lycopersicumCucumis melo58.5348.4792.13381reverse complement
CNT30148461Solanum lycopersicumBrachypodium distachyon21.0458.388.32137reverse complement
CNT30104431Solanum lycopersicumOryza rufipogon21.0421.1488.32137reverse complement
CNT30497700Solanum lycopersicumDigitaria exilis21.0425.0588.32137reverse complement
CNT30174415Solanum lycopersicumVigna angularis22.8928.6589.26149reverse complement
CNT30115272Solanum lycopersicumEutrema salsugineum28.8838.6892.55188forward

Expression of CNT30511593

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MKKTKSSALPPYLSKVWNGRSLSCPSSQELGPHNH*

>peptide 2 (58 aa)
MERQKPFVSFKSRIGASQSLANMIFSHAFLHSWFDILYLVIKLYYGEDTVGEVLRKNS*

>peptide 3 (29 aa)
MKKKKVVLFKTPIVISLLSHFTPRNAPFL*

>peptide 4 (37 aa)
MKTEKNEKEKGRFIQNPNCDITSLPLHTSKRTLLIDL*

Sequence

>CNT30511593
CGAGGATGGAGCGACAGAAGTTTTTTTGAGAAATCAAGAGAAGTTCAAAGCGAGATGAGCCATTTATCATTACGATAGGTGTAAAGTGGAAGTGTAGTGA
TGTATGCAGCTGAGGCATCCTAACAGACCGGTAGACTTGAACCTTGTTCCTACATGACCTGATCAATTCAATCAGGCACTCGCCATCTATTTTCATTGTT
AAAATCTTTGACAAAACGAAAAAACCATTATTCAACTCTTTGACAACATGAAAAAAACCAAAAGCTCTGCCCTCCCTCCCTATCTATCCAAGGTATGGAA
CGGCAGAAGCCTTTCGTGTCCTTCAAGTCAAGAATTGGGGCCTCACAATCACTAGCAAATATGATTTTCTCTCATGCCTTTCTTCATTCATGGTTCGATA
TTCTGTACTTGGTGATTAAACTCTACTACGGTGAAGATACTGTAGGGGAGGTCCTGCGGAAAAATAGCTAGACGCCAGGATGATAAAAAGCTTAACACCT
CTCATTCTTATTACTTTTTCAATATGAAAACAGAAAAAAATGAAAAAGAAAAAGGTCGTTTTATTCAAAACCCCAATTGTGATATCACTTCTCTCCCACT
TCACACCTCGAAACGCACCCTTCTTATAGACTTATAGAGATAAACACGCTT