CANTATAdb - search

« Back to Solanum lycopersicum search

Detailed information on CNT30511493

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONVVIT003033, E-value = 2e-158

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696398	Solanum lycopersicum	Oryza sativa	22.71	42.2	98.03	203	reverse complement
CNT30671914	Solanum lycopersicum	Setaria viridis	33.89	18.22	96.7	303	reverse complement
CNT30619000	Solanum lycopersicum	Sesamum indicum	32.77	9.59	99.32	293	reverse complement
CNT30730480	Solanum lycopersicum	Corchorus capsularis	33.89	24.2	99.34	303	forward
CNT30490123	Solanum lycopersicum	Olea europaea	20.69	10.63	100	185	reverse complement
CNT30505422	Solanum lycopersicum	Nicotiana attenuata	34.23	11.5	100	306	reverse complement
CNT30157617	Solanum lycopersicum	Pistacia vera	16.11	20.66	97.22	144	reverse complement
CNT30181978	Solanum lycopersicum	Secale cereale	33.89	34.28	96.7	303	forward
CNT30300831	Solanum lycopersicum	Triticum aestivum	33.89	39.4	96.7	303	forward
CNT30221603	Solanum lycopersicum	Hordeum vulgare	33.89	25.15	96.04	303	reverse complement
CNT30592527	Solanum lycopersicum	Musa acuminata	12.75	34.13	98.25	114	reverse complement
CNT30543268	Solanum lycopersicum	Brassica napus	33.78	13.16	98.01	302	reverse complement
CNT30234026	Solanum lycopersicum	Brassica oleracea	10.4	23.43	98.92	93	forward
CNT30147386	Solanum lycopersicum	Medicago truncatula	32.77	19	99.66	293	reverse complement
CNT30435868	Solanum lycopersicum	Aegilops tauschii	33.89	21.74	96.7	303	reverse complement
CNT30258698	Solanum lycopersicum	Avena sativa	18.68	20.67	99.4	167	forward
CNT3082633	Solanum lycopersicum	Brassica juncea	21.03	57.14	95.21	188	reverse complement
CNT30207637	Solanum lycopersicum	Helianthus annuus	33.89	15.49	97.69	303	reverse complement
CNT30363124	Solanum lycopersicum	Sorghum bicolor	15.77	62.11	89.36	141	reverse complement
CNT30596312	Solanum lycopersicum	Oryza meridionalis	21.36	37.75	97.91	191	forward
CNT30360996	Solanum lycopersicum	Lactuca sativa	33.89	20.77	99.34	303	reverse complement
CNT30434643	Solanum lycopersicum	Papaver somniferum	31.88	38.31	95.09	285	reverse complement
CNT3056094	Solanum lycopersicum	Amborella trichopoda	31.66	13.1	95.41	283	reverse complement
CNT30108930	Solanum lycopersicum	Oryza longistaminata	33.89	12.95	97.03	303	reverse complement
CNT30118490	Solanum lycopersicum	Citrus clementina	10.4	20.99	94.62	93	reverse complement
CNT3038420	Solanum lycopersicum	Cucumis melo	33.89	21.22	98.02	303	reverse complement
CNT30550626	Solanum lycopersicum	Oryza brachyantha	22.6	68.94	90.1	202	forward

Expression of CNT30511493

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MLNFRVKCLRNESCFCWTDGWIIRRVLIHRRNQGKSSFQGLVASVNHLSPDTFSVPWS*

>peptide 2 (30 aa)
MDYTTCFDSSKESGKKQLSRSRRFGESLEP*

Sequence

>CNT30511493
TGAAATTTTATTTTTTAAAATATTTATCACTTTTAAAAAGTTCAAAAATAATTATATATGTTGAACTTTCGTGTTAAATGTTTGAGAAATGAATCTTGTT
TTTGTTGGACGGATGGATGGATTATACGACGTGTTTTGATTCATCGAAGGAATCAGGGAAAAAGCAGCTTTCAAGGTCTCGTCGCTTCGGTGAATCACTT
GAGCCCTGATACATTTTCGGTGCCATGGAGCTAGACCAGTGAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG
CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCTGTTTCCCTCTCGACTTTGGATCTTAGCACCCAAAAAGTCT
GTCTGTACAAACGATCTAGGCCTGTATTCGGAGTTTCCCTGGGGTTGGTAAGGCGAAATGAGGACGTAACCACTCCCTTGGTTGGGGGCTGTGCCGCCCT
GCCTTTCGATCGATACACAGTTGAGGAGGCCGATCACGAACGCTACAGGTGTGGGAGCGATCCTGGTCAGGGAAGGCTAAGACGGCGAGGAAAATAAAAT
TCATAGAGTAAATTTGTTCCATATATAGAATTAATTTAAAACTCAAAAATAATATAATTACTTATTAACTTAGCTTTAAATTTTAAATTTTGACTGGATC
TTTATTTAATCACACTACCACATTCCTTGGTGCTTGAGTGAGTCAAAATATTGATAAATAAAGAAATAGAATTGGTTGAGTACAAGGTAATGAATGTAAG
TCTTCAATCAACAAAGTCAAGTCAATGCCTGTCTGTTTTCATTTAGTATATATTATATATATGTATATATAAATAATATAAATATCAAATTGTT