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Detailed information on CNT30511491


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMEST000037, E-value = 1e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30407149Solanum lycopersicumBeta vulgaris7.9327.7688.2468reverse complement
CNT30629037Solanum lycopersicumVigna unguiculata16.7826.7288.19144reverse complement
CNT3090241Solanum lycopersicumSolanum tuberosum30.4219.898.08261reverse complement
CNT30194113Solanum lycopersicumSecale cereale17.8335.5885.62153reverse complement
CNT30231593Solanum lycopersicumAnanas comosus1920.6987.12163reverse complement
CNT30369893Solanum lycopersicumOryza glumipatula19.8138.0381.18170reverse complement
CNT30108418Solanum lycopersicumOryza longistaminata16.7831.5181.94144reverse complement
CNT30575540Solanum lycopersicumOryza barthii19.8141.3682.35170forward
CNT30116377Solanum lycopersicumOryza nivara19.8145.4581.18170reverse complement

Expression of CNT30511491

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MESFYSPFYFLLVVRSWNFFVSVFPEYECVTCYN*

Sequence

>CNT30511491
TATATATACCATAAACCAGGATTTCCTTTTAATTCATTTATTTACCAAACTAGCCTTTCCCTTTCATGAAAAGTCTTGACTTTTAAGAAATATTGTGACT
TCTAAGAAAAGTTGTGACTTTTATGGAGAGTTTTTATAGTCCGTTCTATTTTCTTTTGGTAGTTCGATCGTGGAATTTCTTTGTTTCTGTATTTCCGGAG
TATGAGTGTGTGACTTGTTATAATTGATCCTATTGATAGTACAGAGAATGGGTCTGTTATCTTGATAGAGATGGTTCTACTTCGTCAGATATTTATTCGA
ATATTTGGAACACGAAATAGATTAAGAAATATTTGAACTATGATTCATACTTAATATTCAGACCTCGTGTCCGGGCTCCAAAAAATTTTCAAACAAAGAA
TTTTAATTTCTAAATCGAAAGATTCTTTTCTTTCAACCCCTATTTATATTTTGACCAAAAGCAAAGTCTTTCTTTGAATTTTTAGTCATTCTATTTATTC
AGGGAATAAGTGATGATCCGAGGATTCTTACTCAGGGAATCCTTGATTTGATTTAGGTTAGGTTTTTTTATTGAATCATCGTGGTTCTAGTATGAATCTG
AGGTTTTAATTGATTCATAGGGTCTTAACAAGAGAATTCCTATCAATAATAAAGAAAACAAATAATAAAAGCCATATTCCACAAATTCTATAAAGAAATA
GGGAACAAGAGAATTCAAGAGGCCCATAAGTATCAAAATAAAGATAAAGACGACTGCGCCAACTTGATATTTTGGTATTATCGCCACAAAGAAGAGCTTT
CGGATTTTCCAGAGAAGATGGGATCAGAACTTAATAAATTTCAAACTTTCTATTCCAT