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Detailed information on CNT30511330


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672571Solanum lycopersicumSetaria viridis26.2325.4889.72107forward
CNT30587002Solanum lycopersicumMusa acuminata33.5850.7485.4137forward
CNT30555589Solanum lycopersicumOryza glaberrima54.912.8485.71224forward
CNT30440426Solanum lycopersicumAegilops tauschii26.2322.8185.05107forward
CNT30652852Solanum lycopersicumRosa chinensis39.7140.786.42162forward
CNT30624277Solanum lycopersicumDaucus carota49.0242.0290200forward
CNT30721746Solanum lycopersicumTriticum spelta44.6111.3285.16182forward
CNT30367313Solanum lycopersicumSorghum bicolor26.2318.8489.72107forward
CNT30596728Solanum lycopersicumOryza meridionalis26.2322.0685.98107forward
CNT30371441Solanum lycopersicumOryza glumipatula26.2326.2386.92107forward
CNT30646445Solanum lycopersicumCannabis sativa46.5755.0784.74190forward
CNT3054135Solanum lycopersicumAmborella trichopoda50.4933.9486.89206forward
CNT3024196Solanum lycopersicumPopulus trichocarpa56.3750.6687.39230forward
CNT30322486Solanum lycopersicumAsparagus officinalis54.6647.5583.86223forward
CNT30150825Solanum lycopersicumBrachypodium distachyon47.332.684.46193forward
CNT30104395Solanum lycopersicumOryza rufipogon47.0638.8784.38192forward
CNT30578506Solanum lycopersicumOryza barthii26.236.7386.92107forward
CNT30117442Solanum lycopersicumOryza nivara26.2326.2986.92107forward
CNT30725946Solanum lycopersicumLupinus angustifolius18.1435.2491.8974forward

Expression of CNT30511330

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MTNVLMVTTTMGMLHWIHSNTTNLRPAVPLHTVLMV

>peptide 2 (49 aa)
MVLISDDATEAVGTRISSSSSSSVRCDRFNEQPQHDTSSTKNFIFTRIK*

Sequence

>CNT30511330
ATGGTGTTAATATCAGACGATGCTACAGAAGCTGTAGGTACAAGGATCTCCTCTTCTTCTTCTTCTTCAGTTCGATGTGATCGTTTTAATGAACAGCCAC
AACACGATACAAGTTCAACGAAGAACTTCATATTTACCAGGATAAAATAACAAGATAGAAAAGTAACAAGTGAATGGCTTAAGCCTTGTCAGCCTTGGCT
GCAGTAGCAGCGGCTTGACCACGAAGACGACCAGTCCTCCTTGCAGCAATAAGACCAACCTTTTGTCCAGGAGGTGCATCACGACGGACTGTACTGGCAT
GACCAATGTGTTGATGGTTACCACCACCATGGGGATGCTCCACTGGATTCATAGCAACACCACGAACCTTAGGCCAGCAGTTCCTCTTCACACGGTACTT
ATGGTAAG