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Detailed information on CNT30511017


BLAST search results

BLAST vs Swiss-Prot:
sp|P68172|SAHH_NICSY, E-value = 4e-104

BLAST vs NONCODE:
NONGMAT001730, E-value = 2e-21

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639595Solanum lycopersicumNymphaea colorata24.3330.7280.69145forward
CNT30628366Solanum lycopersicumVigna unguiculata20.978.7580.8125forward
CNT3096327Solanum lycopersicumSolanum tuberosum99.8374.8494.62595forward
CNT30144739Solanum lycopersicumMedicago truncatula29.0337.2881.5173forward
CNT30365764Solanum lycopersicumSorghum bicolor21.4854.4780.47128forward
CNT30358619Solanum lycopersicumLactuca sativa40.653.0782.64242forward
CNT30645006Solanum lycopersicumCannabis sativa74.8354.1983.18446forward
CNT3021984Solanum lycopersicumPopulus trichocarpa66.6118.5684.38397forward

Expression of CNT30511017

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MSFTLYSRPEVVFSTSRAMGKASIREKKGFKMRSERLFSSSFGVFQGRRR

>peptide 2 (67 aa)
MLQEHHLTSAPKAVRVSIRTAVWIVICRDPVIFAPLKGCEGPNSAREAMRPGISTSASSISSLPKSA*

>peptide 3 (76 aa)
RIWDCSILSKLLFSLNTLMNQQSSITSIINNQIRTTTWTPIKCPLSTPPVLLQSLTFPGKNSSTVTCNGCCSMVLS*

Sequence

>CNT30511017
CTAGGATCTGGGATTGTTCCATTCTTAGCAAACTCCTCTTCAGCCTTAACACCCTCATGAATCAACAGAGTAGCATCACCTCCATCATCAACAATCAGAT
CAGGACCACCACCTGGACCCCAATCAAGTGCCCTCTCAGTACACCACCAGTACTCCTGCAAAGTCTCACCTTTCCAGGCAAAAACAGCAGCACTGTCACG
TGCAATGGCTGCTGCAGCATGGTCCTGAGTTGAGAAGATGTTGCAAGAACACCATCTAACTTCAGCACCCAAAGCAGTTAGGGTTTCAATAAGAACAGCA
GTTTGGATAGTCATATGCAGAGATCCAGTGATCTTTGCACCTTTAAAGGGCTGTGAAGGGCCAAATTCAGCACGGGAAGCCATGAGACCAGGCATTTCAA
CTTCAGCAAGCTCGATTTCGAGCCTGCCGAAGTCAGCCTGAGACATGTCCTTCACCTTGTACTCGCGGCCAGAGGTGGTCTTCTCAACGAGTAGAGCCAT
GGGTAAGGCGAGTATAAGAGAAAAGAAAGGGTTTAAGATGAGATCTGAGAGGCTTTTCTCTTCTTCCTTTGGGGTTTTTCAGGGAAGAAGAAGAAT