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Detailed information on CNT30511016


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30468477Solanum lycopersicumSaccharum spontaneum15.2642.6796.8896forward
CNT30362312Solanum lycopersicumSorghum bicolor14.6329.4992.3992reverse complement

Expression of CNT30511016

Peptides detected in this lncRNA

>peptide 1 (34 aa)
YLSNNGIWIMTNSLFTWFWGHNHYVGEMAEWFKA*

Sequence

>CNT30511016
CGTACCTATCCAATAATGGAATATGGATTATGACTAACTCGCTATTCACTTGGTTTTGGGGTCATAATCATTATGTAGGAGAGATGGCCGAGTGGTTCAA
GGCGTAGCATTGGAACTTCTATCTAGGCTGTTGTTTACCGAGGGTTCGAATCCCTCTCTTTCCGTACCTTCTCTTAATTCGCCAATTTTACTAACAACAA
GGACTCAAATAGAATCGGATACCATTATTCCAACAGCTAGACCCTTCTTTGATCTAATGATATAGATTCTCAATTCCTAATTGTTGTGACGCGTAAAATA
GAATACTCAAAAATAATCATAATCAAAATACTGTAAAGAAAAGAATAGACAAGGAATGAAAATAGATCTTTGTCTATGATACAAAAATGGGGGAAATCTA
GATCAAACTCGTATTGATCTTACTTAACTTACTTAACCTTGGATTAGTTTACTTCGCCTAAAGGGAAGAAATTTTGGCGAACCCTTGGTTTAAGTCTGAG
GTTAAAGTCTGACGAGAATAATATTCTACGACTAGCAATTCATTTATTTTCAAACTTACCCATTTACTATTGATTATTTGATTGACTAATCCTTTATATT
GTAACGCCTGAAGGGTCAAATGATTTGGT