Detailed information on CNT30510959


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727745Solanum lycopersicumCorchorus capsularis20.3321.9190.3262forward
CNT30200314Solanum lycopersicumPisum sativum18.3624.2487.556reverse complement
CNT3096457Solanum lycopersicumSolanum tuberosum10010091.15305forward
CNT30653670Solanum lycopersicumRosa chinensis23.2817.2788.7371forward
CNT30210362Solanum lycopersicumHelianthus annuus22.9522.887.1470forward
CNT30714975Solanum lycopersicumMalus domestica golden22.9523.4988.5770reverse complement
CNT30410257Solanum lycopersicumPapaver somniferum21.9723.1891.0467reverse complement

Expression of CNT30510959

Peptides detected in this lncRNA

>peptide 1 (55 aa)
PSSITLACNPSGGNNVVEYWASPKRLGLMGLYLACPVQVQSWALWSNRKNGLMGS*

Sequence

>CNT30510959
GCCGAGCTCAATAACTTTAGCTTGTAACCCAAGTGGGGGCAATAATGTGGTGGAATATTGGGCTAGTCCAAAAAGGTTGGGCCTGATGGGCTTATATCTG
GCCTGCCCTGTCCAAGTACAGAGTTGGGCCTTGTGGTCCAATCGAAAGAATGGGCTGATGGGCTCCTAAAGTTGGGCGGAGCGCGTGAGGCTGGTTTCAC
AGAGCAACGAACAGTTCCCGCTCTGTACAGTGGAAGGATAACGAGTCAGTGCCGGCCAGACCCAGTAAGAGCCTCGTGGGTTGCTTCGATTAAACCACCA
CTTTT